Pairwise Alignments

Query, 510 a.a., DNA recombination protein RmuC from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., recombinase RmuC from Pseudomonas simiae WCS417

 Score =  369 bits (947), Expect = e-106
 Identities = 200/470 (42%), Positives = 305/470 (64%), Gaps = 28/470 (5%)

Query: 43  QLEQQSHWHAQQIQQLNEQLTTAQQELD----ELDALRDKNEFELKQSHGKLMAVLEKLR 98
           QL+++ +      + L E+L TAQ   +    +LDA RD+   +L Q++    A L  +R
Sbjct: 25  QLQRRLNARMTGWELLEERLATAQLAQEGLAAQLDASRDEIS-DLSQANAAKQADLAAVR 83

Query: 99  Y-FEAVKQERQQYAD--------------ELNQVRAAKAELESQLREQEARHQQQLVASQ 143
              E ++ +R    D              EL ++ A  A L ++LREQ+  HQQ+L    
Sbjct: 84  REVELLQIDRDNARDAAHAWNLDRSAKETELRRLDALSAALRAELREQQDSHQQRLTD-- 141

Query: 144 EKLQLLERAEERLKQQFEHLANQVFEHKTATVDVQNRQSLEGLLTPLKEQLEGFKKQVND 203
                L+ + + L+ QF  LA ++F+ +       +++ L  LL PLKE+++ F+K+V +
Sbjct: 142 -----LQGSRDELRAQFAELAGKIFDEREQRFAETSQERLGQLLDPLKERIQSFEKRVEE 196

Query: 204 SFNHEAKERHTLVHELRNLQRLNEQMAKEAVNLTQALKGDNKQQGNWGEVVLARVLAESG 263
           S+ +EA+ER +L  EL  LQ+LN +++ EA NLT+ALKG  K QGNWGE++L RVL  +G
Sbjct: 197 SYQNEARERFSLAKELERLQQLNLRLSDEATNLTRALKGQ-KTQGNWGELILERVLEHAG 255

Query: 264 LREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQVVIDSKMALVAYERYFHAETDSERDS 323
           L +G EYQTQVSL+   G+R+QPDV++ LP +KQVV+DSK++L AY++Y  AE D    +
Sbjct: 256 LEKGREYQTQVSLKGPDGERFQPDVLIMLPGDKQVVVDSKVSLTAYQQYVAAEDDVIGQA 315

Query: 324 ALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVNDAMEQ 383
           AL++H+L+LRNH++GL  KDY +L+G+ SLD+VL+F+P+E AF  A+QA+P+L  +A ++
Sbjct: 316 ALKQHVLSLRNHVKGLAGKDYKRLEGLHSLDFVLLFVPIEAAFSAALQAEPNLFQEAFDR 375

Query: 384 NIILVSPTTLLVALRTIDNLWRNERQNQNAQLIAERASKLYDKLRLFVEDMEGLGGALDK 443
           +I++VSPTTLL  LR ID+LW+ ERQ+QNA+ IAERA  LYDK  LF++D++ +G  L +
Sbjct: 376 HIVIVSPTTLLATLRVIDSLWKQERQSQNAREIAERAGWLYDKFVLFIQDLDEVGNRLQQ 435

Query: 444 ANQSYQGAMNKLVTGRGNAIRQAESFKQLGVEIKRSIPQPLIERAQQAPD 493
            +++Y  A NKL  GRGN + + E  + LG    +S+P  L+ERA    D
Sbjct: 436 LDKAYSAARNKLTDGRGNLVSRTEQLRLLGARASKSLPADLLERAMTDSD 485



 Score = 35.4 bits (80), Expect = 5e-06
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 4/140 (2%)

Query: 33  YQLKTQLLEQQLEQQSHWHAQQIQQLNEQLTTAQQELDELDALRDKNEFELKQSHGKLMA 92
           + L     E +L +     A    +L EQ  + QQ L +L   RD+   +  +  GK+  
Sbjct: 103 WNLDRSAKETELRRLDALSAALRAELREQQDSHQQRLTDLQGSRDELRAQFAELAGKIFD 162

Query: 93  VLEKLRYFEAVKQERQQYADELNQVRAAKAELESQLREQEARHQQQLVASQEKLQLLERA 152
             E+ R+ E  ++   Q  D L +   +  +   +  + EAR +  L    E+LQ L   
Sbjct: 163 EREQ-RFAETSQERLGQLLDPLKERIQSFEKRVEESYQNEARERFSLAKELERLQQLNL- 220

Query: 153 EERLKQQFEHLANQVFEHKT 172
             RL  +  +L   +   KT
Sbjct: 221 --RLSDEATNLTRALKGQKT 238