Pairwise Alignments

Query, 510 a.a., DNA recombination protein RmuC from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., DNA recombination protein RmuC from Sphingobium sp. HT1-2

 Score =  149 bits (375), Expect = 3e-40
 Identities = 125/506 (24%), Positives = 231/506 (45%), Gaps = 54/506 (10%)

Query: 22  GVAIGWWVKQRYQLKTQLLEQQLEQQSHWHAQQIQQLNEQLTTAQQELDELDALRDKNEF 81
           G+A+GW +K                      + +  L  +      +LD   A R+    
Sbjct: 16  GIAVGWLLK---------------------GKALAPLTAEKADLAGKLDIATAQRNGAIA 54

Query: 82  EL---KQSHGKLMAVLEKLRYFEAVKQERQQ--YADELNQVRAAKAELESQLREQEARHQ 136
           EL   K+   + M+ L +L   +A  ++R +   A    ++ A + E E+ LR+  A   
Sbjct: 55  ELAVEKERVAQGMSQLARLESAQAASEQRIEALQAAASQRIEAVQTEREAALRDLAALQS 114

Query: 137 Q---QLVASQEKLQLLERAEERLKQQFEHLANQVFE-----------HKTATVDVQNRQS 182
               +  A ++++  L+ A+E+L  QF  +  ++ E            + A    ++   
Sbjct: 115 DIHARTQAFEQQIAALKDAKEQLSAQFSEIGGKLLESAQTQFLTRADQRFAQASEKSEAQ 174

Query: 183 LEGLLTPLKEQLEGFKKQVNDSFNHEAKERHTLVHELRN-LQRLN---EQMAKEAVNLTQ 238
           L+ LL P++  L    K+  +      K+R     ELR  +Q+++    Q+ +E   L  
Sbjct: 175 LKTLLNPVETTL----KRYEEGLARVEKDRVGSYAELREAVQQVHLGQGQVREETAKLVN 230

Query: 239 ALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQV 298
           AL+   K +G WGE     ++  +GL    +++ +VS+  E G R +PD +++LP ++Q+
Sbjct: 231 ALRAAPKTRGRWGEQQFKNLIETAGLSPFVDFKEEVSVAVEDG-RLRPDFVINLPGDQQM 289

Query: 299 VIDSKMALVAYERYFHAETDSERDSALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVLM 358
           V+D K +LVAY         + RD+ + +H  A+R H   LG+K Y + +  ++ D+V+M
Sbjct: 290 VVDVKCSLVAYLNAVDQVDPALRDAHMLDHARAMRTHADALGRKAYWE-QFDKAPDFVIM 348

Query: 359 FIPVEPAFQVAIQADPSLVNDAMEQNIILVSPTTLLVALRTIDNLWRNERQNQNAQLIAE 418
           ++P +     A++AD  L   A +  +I+  P T L   RT+   WR  +  + AQ + +
Sbjct: 349 YVPGDNFVTAALEADMELWERAAKNRVIICGPATFLPLARTLAGHWRQAKMQEQAQQVGQ 408

Query: 419 RASKLYDKLRLFVEDMEGLGGALDKANQSYQ---GAMNKLVTGRGNAIRQAESFKQLGVE 475
              +LY++L +    ++ LG  L+ A  +Y    G+    V   G   R  +  +  G E
Sbjct: 409 LGKELYERLSVAATHLKRLGSGLNSAVSNYNSFIGSFETRVLSTGRKFRDLD-IETGGKE 467

Query: 476 IKRSIPQPLIERAQQAPDQENAPLVE 501
           I+   P  ++ R  QA +    P  E
Sbjct: 468 IEAMEPLDVLARDAQAEEARALPAAE 493