Pairwise Alignments

Query, 261 a.a., ribosomal RNA small subunit methyltransferase J from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., SAM-dependent methyltransferase from Pseudomonas simiae WCS417

 Score =  219 bits (557), Expect = 6e-62
 Identities = 118/224 (52%), Positives = 154/224 (68%), Gaps = 8/224 (3%)

Query: 30  DSPFALVLSEERLELRKLDEPKLGAIYVDWVEGAVAHRRKFGGGKGQSIAKAAGLNKGVT 89
           D+ F+L + E  L+L++L     G + VD+VEG  AHRR +GGG GQ IAKA G+ +GV 
Sbjct: 38  DADFSLQVGEHGLQLQQLGPDAPGPVRVDFVEGGAAHRRLYGGGSGQMIAKAVGIVQGVR 97

Query: 90  PVVLDATAGLGRDAFVLASLGCRVQMVERHPVVAALLEDGLQRAKQDDEIGAWVSERISL 149
           P V+DATAGLG+DAFVLASLGC + ++ER P++ ALLEDGL R   D E+   V+ R+ L
Sbjct: 98  PRVMDATAGLGKDAFVLASLGCEMSLIERQPLIGALLEDGLARGADDFEVAPIVA-RMKL 156

Query: 150 LHASSHDALQQLASDPNFTSPDVVYLDPMYPHPENKKKTALVKKEMRVFQSLVGADNDAD 209
           L  +S D +     +P    P V+YLDPM+PH   ++KTALVKKEMR+F+ LVG D DA 
Sbjct: 157 LKGNSIDVMLNWEGEP----PQVIYLDPMFPH---REKTALVKKEMRLFRPLVGDDPDAP 209

Query: 210 ALLEPALQLAQKRVVVKRPDYAPWLGNRKPSMAMETKKNRFDVY 253
           ALL  AL LA  RVVVKRP  AP +   KPS A++ K +R+D+Y
Sbjct: 210 ALLAAALALASHRVVVKRPRKAPCIDGPKPSHALDGKSSRYDIY 253