Pairwise Alignments

Query, 261 a.a., ribosomal RNA small subunit methyltransferase J from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., Ribosomal RNA small subunit methyltransferase J from Pseudomonas putida KT2440

 Score =  225 bits (573), Expect = 8e-64
 Identities = 125/252 (49%), Positives = 172/252 (68%), Gaps = 9/252 (3%)

Query: 3   IQLICQAPQRAQELEQIAARWQLQASDDSP-FALVLSEERLELRKLDEPKLGAIYVDWVE 61
           I++     + AQ+    A R  L   DD+  FA+ +  + L++++L     G + VD+VE
Sbjct: 8   IRVEAMTAEYAQQARAWAERLGLPLQDDTAAFAVQVGVDGLQIQQLGPQAPGPVRVDFVE 67

Query: 62  GAVAHRRKFGGGKGQSIAKAAGLNKGVTPVVLDATAGLGRDAFVLASLGCRVQMVERHPV 121
           G  AHRR+FGGG GQ IAKA G+ +G+ P VLDATAGLG+DAFVLASLGC++ ++ER P+
Sbjct: 68  GQAAHRRQFGGGNGQMIAKAVGIAQGIRPQVLDATAGLGKDAFVLASLGCQMTLIERQPL 127

Query: 122 VAALLEDGLQRAKQDDEIGAWVSERISLLHASSHDALQQLASDPNFTSPDVVYLDPMYPH 181
           +AALLEDGL RA+ D+E+G  V  R+ LL  ++ + ++    +    +P V+YLDPM+PH
Sbjct: 128 IAALLEDGLARARADEEVGPIVG-RMRLLTGNAIERMRAWEGE----APQVIYLDPMFPH 182

Query: 182 PENKKKTALVKKEMRVFQSLVGADNDADALLEPALQLAQKRVVVKRPDYAPWLGNRKPSM 241
              + K+ALVKKEMRVF+ LVG D DA ALLE AL LA  RVVVKRP  AP +   KPS 
Sbjct: 183 ---RDKSALVKKEMRVFRPLVGDDLDAPALLEAALALASHRVVVKRPRKAPIIDGPKPSH 239

Query: 242 AMETKKNRFDVY 253
           ++E K +R+D+Y
Sbjct: 240 SLEGKSSRYDIY 251