Pairwise Alignments

Query, 261 a.a., ribosomal RNA small subunit methyltransferase J from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., 16S rRNA (guanine(1516)-N(2))-methyltransferase from Pseudomonas sp. S08-1

 Score =  234 bits (597), Expect = 1e-66
 Identities = 133/251 (52%), Positives = 170/251 (67%), Gaps = 8/251 (3%)

Query: 3   IQLICQAPQRAQELEQIAARWQLQASDDSPFALVLSEERLELRKLDEPKLGAIYVDWVEG 62
           I++  Q P  A+   + A R  L    ++ FAL L EE L+L +L     G + VD+VEG
Sbjct: 10  IRVEAQLPVFAESAGRWAERLGLPLQGEAEFALQLGEEGLQLAELGPQAPGPVRVDFVEG 69

Query: 63  AVAHRRKFGGGKGQSIAKAAGLNKGVTPVVLDATAGLGRDAFVLASLGCRVQMVERHPVV 122
           AVAHRR +GGG GQ IAKA G+  GV P VLDATAGLGRDAFVLASLGC V M ER P++
Sbjct: 70  AVAHRRLYGGGSGQMIAKAVGVQPGVRPSVLDATAGLGRDAFVLASLGCAVTMSERQPII 129

Query: 123 AALLEDGLQRAKQDDEIGAWVSERISLLHASSHDALQQLASDPNFTSPDVVYLDPMYPHP 182
           AALLEDGL RA +D E+ A ++ ++ LL  ++ + ++    +P    P V+YLDPM+PH 
Sbjct: 130 AALLEDGLARAARDAEV-APIAAQMRLLQGNAIELMRDWQGEP----PQVIYLDPMFPH- 183

Query: 183 ENKKKTALVKKEMRVFQSLVGADNDADALLEPALQLAQKRVVVKRPDYAPWLGNRKPSMA 242
             + K+ALVKKEMR+F+ LVG D DA ALLE AL LA  RVVVKRP  AP +   KPS A
Sbjct: 184 --RDKSALVKKEMRLFRPLVGDDLDAPALLEAALALASHRVVVKRPRKAPIIEGAKPSYA 241

Query: 243 METKKNRFDVY 253
           +E K +R+D+Y
Sbjct: 242 LEGKSSRYDIY 252