Pairwise Alignments

Query, 261 a.a., ribosomal RNA small subunit methyltransferase J from Vibrio cholerae E7946 ATCC 55056

Subject, 250 a.a., predicted SAM-dependent methyltransferase (NCBI) from Escherichia coli BW25113

 Score =  285 bits (729), Expect = 6e-82
 Identities = 155/253 (61%), Positives = 185/253 (73%), Gaps = 8/253 (3%)

Query: 1   MLIQLICQAPQRAQELEQIAARWQLQASDDSPFALVLSEERLELRKLDEPKLGAIYVDWV 60
           M I LI +       L  +AARW L+  +D+  ALVL+ E LELRK DEPKLG I+VD+V
Sbjct: 1   MKICLIDETGTGDGALSVLAARWGLEHDEDNLMALVLTPEHLELRKRDEPKLGGIFVDFV 60

Query: 61  EGAVAHRRKFGGGKGQSIAKAAGLNKGVTPVVLDATAGLGRDAFVLASLGCRVQMVERHP 120
            GA+AHRRKFGGG+G+++AKA G+     P V+DATAGLGRDAFVLAS+GCRV+M+ER+P
Sbjct: 61  GGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNP 120

Query: 121 VVAALLEDGLQRAKQDDEIGAWVSERISLLHASSHDALQQLASDPNFTSPDVVYLDPMYP 180
           VVAALL+DGL R   D EIG W+ ER+ L+HASS  AL  +        P VVYLDPM+P
Sbjct: 121 VVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT-----PRPQVVYLDPMFP 175

Query: 181 HPENKKKTALVKKEMRVFQSLVGADNDADALLEPALQLAQKRVVVKRPDYAPWLGNRKPS 240
           H   K+K+ALVKKEMRVFQSLVG D DAD LLEPA  LA KRVVVKRPDYAP L N    
Sbjct: 176 H---KQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLANVATP 232

Query: 241 MAMETKKNRFDVY 253
            A+ TK +RFD+Y
Sbjct: 233 NAVVTKGHRFDIY 245