Pairwise Alignments

Query, 768 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  236 bits (601), Expect = 7e-66
 Identities = 162/550 (29%), Positives = 272/550 (49%), Gaps = 14/550 (2%)

Query: 222  YDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGHHIRDFYQDEEVLTPRQMLLLPS 281
            ++     +L  D   +I Q N    ++ GY    +L   +      +E        ++  
Sbjct: 722  FEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQ-LPGMLTVDEQQEGHLRYVVKQ 780

Query: 282  RHASSVWRREVCYRHHSGETVWVRENIRPLVET----GTLLIVGEDITETRQLADQLAYQ 337
             H    W  EV  +   G+       I  +++      + +    DI+E +    ++   
Sbjct: 781  LHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRL 840

Query: 338  ARYDLLTHTLNRNQFELELAKALKETDSQLRTHAMLYLDLDQLKVLNDTAGHDAGDGAIQ 397
            A YD LTH  NR  F+  L  AL++ + Q     +++LDLD+ K +ND+ GH AGD  ++
Sbjct: 841  AYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLK 900

Query: 398  FCASMLEDVLPFKATLARMGGDEFSVLLRDCTERD-----AVLVAQSIIHALSEVAFVWE 452
              A  L   +    T+ARMGGDEF++LL+    R+     A+ VA++I+ +L    FV E
Sbjct: 901  DMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHVAENILGSLVR-PFVLE 959

Query: 453  HIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYRQDDEDLRRRQLE 512
            +  F +T SIGI +     +    +   ADTA + AKE G+N F  Y+ +       +LE
Sbjct: 960  NREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFYQAEMNASALERLE 1019

Query: 513  MESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEYVSPGIFVPASER 572
            +ES +L H    NE I  +  +         L   E L+R ++     V PG F+P  E 
Sbjct: 1020 LES-DLRHAMEQNEFILYYQPQFS--GDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEE 1076

Query: 573  YNLAHRLDRKIVEQTFNWLEARPQVLDKLGRVSINLSGNSIGNPDFVAFLLERLRDSRIP 632
              L   +   ++ +    L+A  +   ++ +VS+N+S     +      +   L +S +P
Sbjct: 1077 LGLVVDVGDWVLREASRQLKAWHKAKVRVPKVSVNISARQFSDGQLGTRIANILEESGLP 1136

Query: 633  CSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFGYLQKLPVDIVKID 692
             + +  E+TE+  MR +N+A+++L+ LK+LG  +A+DDFG+G SS  YL++ P+D++KID
Sbjct: 1137 PACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKID 1196

Query: 693  GIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQIGVDYAQGYLFSR 752
              FV  + + E D  + R+I  +   +  + +AE VE  + LE L++ G D  QGYLF R
Sbjct: 1197 RTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGR 1256

Query: 753  PQPIADWVAE 762
            P P   + A+
Sbjct: 1257 PMPAHQFEAQ 1266



 Score = 28.9 bits (63), Expect = 0.002
 Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 38/204 (18%)

Query: 185 PLPTREESQILLEAQDITWRKITEDKLFQREASLRHYYDQQPVMMLTLD----------- 233
           PL  R+   ++L   DIT RK  E  L +RE+         P  +   D           
Sbjct: 416 PLQRRDYQAVILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNR 475

Query: 234 --------ERNHIQQVNHFAEQLLGYPADVMLGHHIRDFYQDEEVLTPRQMLLLPSRHAS 285
                   +R  + Q+     +LL +P D      +R   +D     P     L  RH  
Sbjct: 476 HLGQTLGYDRTELAQMGDRFWELLLHPEDAAHYQALRRQQRDNCHDQPLH-CQLRFRHRD 534

Query: 286 SVWRREVCYRHHSGETVWVRENIRPLVETGTLLIVGEDITETRQLADQLA-YQARYDLLT 344
             WR   CY     E V  R N   LV    ++ VG+D+T   + +  L   + RY +L 
Sbjct: 535 GSWR---CY--DIREQVLTR-NAEGLVT--RIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586

Query: 345 HTLNRNQFELELAKALKETDSQLR 368
            +         ++  +  TD+QL+
Sbjct: 587 ES---------ISDVIFSTDNQLK 601