Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Multidrug resistance transporter, Bcr/CflA family from Variovorax sp. SCN45

 Score =  162 bits (409), Expect = 2e-44
 Identities = 122/402 (30%), Positives = 200/402 (49%), Gaps = 16/402 (3%)

Query: 7   SQVSKQQMVLLTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLF 66
           +QVS+  +VL  LL    P AID+YLPALP I  A   +    Q ++  F  A+G GQL 
Sbjct: 6   AQVSRYAIVL-GLLTTIGPFAIDMYLPALPAIGHALGADPHAMQASLMAFFIAVGAGQLV 64

Query: 67  AGPLADKYGRRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVR 126
           AGPL+D +GRR   + G+ ++ L+++    A  +  ++  R LQGLGACA  V   A VR
Sbjct: 65  AGPLSDMFGRRRPMVAGLVLFMLASIGCALAPDVGVLIALRFLQGLGACACMVTPRAVVR 124

Query: 127 DLFGPQRSGKMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALR 186
           DL+    + +M+S L       P LAP++GS++ +  GWRA F  +     L GLAM + 
Sbjct: 125 DLYTGPEAARMMSLLLMVYSVSPILAPLVGSFVAESVGWRAVFGVVAALG-LAGLAMLMA 183

Query: 187 -LQESNPYMGSRPAVFK--LSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMER 243
            L E+ P      + F+  ++ Y  +L+   F+  A +    ++    YV ++P ++   
Sbjct: 184 FLPETRPAAARLSSNFRSAMAGYGLLLRDRRFMALAFMASFTVSAFFVYVANSPFVMSAH 243

Query: 244 LQLSMNEFTFWFGVNAVINIIACMTAPKVMDKLGTRWSLIIGITTLMIAGSL-MLVLRNQ 302
             +S  ++   F +NAV  +        ++ + G R   ++    ++ AGS+ +L++   
Sbjct: 244 YGVSPRQYALLFALNAVSLLALSQANGWLVTRFGIR--RVLRTAVMVQAGSIGLLLVLTL 301

Query: 303 ASALAFMLPVFLSSIGF---AWILGAAAGKALAPFGDKAGTAAALLGLFQMSGSGLLVGT 359
           A      + V L  IG+     I+ A    A+      AGTA+AL+G    +G  L+V  
Sbjct: 302 AGIDRLAVMVVLLMIGYGVNGLIVPATFVLAMEGHASLAGTASALIGTMNFAGGALMVAL 361

Query: 360 LQRI---MPEPQLLIGLTMWLAAPALLILFSPLGFRWHASVS 398
           +       P P ++ G+    A   +L + SP G R  A+V+
Sbjct: 362 VAPFANGKPLP-MVAGIAACAAVVFVLAMRSP-GVRHPAAVA 401