Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., Multidrug resistance protein D from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  140 bits (354), Expect = 5e-38
 Identities = 108/383 (28%), Positives = 176/383 (45%), Gaps = 10/383 (2%)

Query: 14  MVLLTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLADK 73
           +++L LLV    +A  IY+PA+  ++QA +V     Q  +  +L   GV QLF GPL+D+
Sbjct: 2   LLMLVLLVAVGQMAQTIYIPAIADMAQALNVREGAVQSVMAAYLLTYGVSQLFYGPLSDR 61

Query: 74  YGRRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGPQR 133
            GRR V L G+SI+ ++ L A +  S+  ++ A  +QG+G     V A    RDL+   +
Sbjct: 62  VGRRPVILVGMSIFMVATLFAMTTHSLTVLIAASAMQGMGTGVGGVMARTLPRDLYEGTQ 121

Query: 134 SGKMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALRLQESNPY 193
                S LN  I   P LAP++GS L   + WRA ++F+      V  +MA  + E+ P 
Sbjct: 122 LRHANSLLNMGILVSPLLAPLIGSLLDTLWNWRACYAFLLVLCAGVTFSMARWMPETRP- 180

Query: 194 MGSRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLSMNEFTF 253
               P    ++ Y  +     F  +  + +  +A I  +   + V++   L LS    + 
Sbjct: 181 -AGAPRTRLIASYKTLFGNGAFNCYLLMLIGGLAGIAVFEACSGVLMGAVLGLSSMVVSI 239

Query: 254 WFGVNAVINIIACMTAPKVMDKLGTRWSLII--GITTLMIAGSLMLV--LRNQASALAFM 309
            F    ++ I A         +   R+S ++   +   ++AG +M +       +    +
Sbjct: 240 LF----ILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLMMWIPGWFGVMNVWTLL 295

Query: 310 LPVFLSSIGFAWILGAAAGKALAPFGDKAGTAAALLGLFQMSGSGLLVGTLQRIMPEPQL 369
           +P  L   G   +   A   A+ PF   AGTA AL+G  Q  GSG+L      +    Q 
Sbjct: 296 IPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLAWLSAMLPQTGQG 355

Query: 370 LIGLTMWLAAPALLILFSPLGFR 392
            +GL M L    +L  + PL  R
Sbjct: 356 SLGLLMTLMGLLILACWLPLASR 378