Pairwise Alignments

Query, 278 a.a., shikimate dehydrogenase from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) from Variovorax sp. SCN45

 Score =  224 bits (570), Expect = 2e-63
 Identities = 132/285 (46%), Positives = 168/285 (58%), Gaps = 13/285 (4%)

Query: 5   IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGG----- 59
           +D Y V GNP+ HS+SP IH  FA    Q M Y  + VP+  F E    F A+       
Sbjct: 1   MDLYCVIGNPVEHSRSPRIHARFAELCGQQMDYGRRLVPIGAFAEGIAAFRAEAAERGDT 60

Query: 60  -RGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQ 118
            RGCN+TVPFK EA   A   +ERA LA AVNTL+   DG I  DNTDG GLV D++   
Sbjct: 61  ARGCNITVPFKFEAAALAQHTSERATLAQAVNTLRFEADGGIHADNTDGIGLVNDIVRNA 120

Query: 119 -VLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY-----GE 172
            V L+G  +LLIGAGGAA GVL PLLD   A + V NRT  KA +L    AA        
Sbjct: 121 GVPLQGKALLLIGAGGAAAGVLGPLLDAGAARVVVANRTVDKAIELVRRHAAVALRHGAS 180

Query: 173 VKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQ 232
           ++A A +++  ++DV++N+T++SL G+   +   +     +  DMMYG     F  WA  
Sbjct: 181 LEAWALDKVPGAFDVVVNATASSLAGDAVPVSADVLRPGGLAVDMMYGPAAAGFMAWAEA 240

Query: 233 HGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLEGA 277
           HG A A DGLGMLV QAAESF +WRG+RP + Q+L ELR +L  A
Sbjct: 241 HG-AVARDGLGMLVEQAAESFEIWRGVRPPSAQVLAELRSSLAAA 284