Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 907 a.a., DNA topoisomerase 1 from Xanthobacter sp. DMC5

 Score = 60.8 bits (146), Expect = 7e-14
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 2   SMSRKIDPQLFAAHEHALQSSPCPQCGAA-LQLRHGKHGPFLGCTAYPECDYIKPL---H 57
           ++   +   +F   E       CP CG   L L+ GK G F+GC+ YPEC + +PL   +
Sbjct: 595 ALDEMLTAHIFPPREDGTDPRLCPTCGTGRLSLKMGKFGAFIGCSNYPECRHTRPLTGDN 654

Query: 58  QNDGHIIKELGVPCPECGHELVLRQGRYGMFI 89
             +G   + LG+  P+ G E+ +R GR+G ++
Sbjct: 655 PQEGDGTRVLGLD-PDSGEEVTIRSGRFGTYL 685



 Score = 48.5 bits (114), Expect = 3e-10
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 71  CPECGH-ELVLRQGRYGMFIGCSHYPQCHHIESM--DSPSQEETSPDI-LCPECGKGHLI 126
           CP CG   L L+ G++G FIGCS+YP+C H   +  D+P + + +  + L P+ G+   I
Sbjct: 617 CPTCGTGRLSLKMGKFGAFIGCSNYPECRHTRPLTGDNPQEGDGTRVLGLDPDSGEEVTI 676

Query: 127 ERKSRFG 133
            R  RFG
Sbjct: 677 -RSGRFG 682



 Score = 37.7 bits (86), Expect = 6e-07
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 106 PSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCK 146
           P +E+ +   LCP CG G L  +  +FG  F  C  YP+C+
Sbjct: 606 PPREDGTDPRLCPTCGTGRLSLKMGKFG-AFIGCSNYPECR 645