Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 860 a.a., DNA topoisomerase I (EC 5.99.1.2) from Sphingobium sp. HT1-2

 Score = 54.7 bits (130), Expect = 5e-12
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 3   MSRKIDPQLFAAHEHALQSSPCPQCG-AALQLRHGKHGPFLGCTAYPECDYIKPLHQNDG 61
           + + ++P LF           CP C    L LR G+ G F+ C+ YPEC Y +   Q  G
Sbjct: 566 LDKFLEPMLFPPKADGSNPRACPLCADGQLSLRGGRFGAFIACSNYPECKYTRKFGQPGG 625

Query: 62  HIIKELGVPC----PECGHELVLRQGRYGMFI 89
               + G       PE G ++V + GR+G +I
Sbjct: 626 SDGADTGPEILGQHPETGQDIVKKSGRFGPYI 657



 Score = 49.3 bits (116), Expect = 2e-10
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 7/69 (10%)

Query: 71  CPECGH-ELVLRQGRYGMFIGCSHYPQCHHIESMDSPSQE---ETSPDIL--CPECGKGH 124
           CP C   +L LR GR+G FI CS+YP+C +      P      +T P+IL   PE G+  
Sbjct: 587 CPLCADGQLSLRGGRFGAFIACSNYPECKYTRKFGQPGGSDGADTGPEILGQHPETGQ-D 645

Query: 125 LIERKSRFG 133
           ++++  RFG
Sbjct: 646 IVKKSGRFG 654



 Score = 38.9 bits (89), Expect = 3e-07
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 100 IESMDSPSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKF 147
           +E M  P + + S    CP C  G L  R  RFG  F AC  YP+CK+
Sbjct: 570 LEPMLFPPKADGSNPRACPLCADGQLSLRGGRFG-AFIACSNYPECKY 616