Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 896 a.a., type I DNA topoisomerase from Magnetospirillum magneticum AMB-1

 Score = 55.5 bits (132), Expect = 3e-12
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 2   SMSRKIDPQLFAAHEHALQSSPCPQCGAA-LQLRHGKHGPFLGCTAYPECDYIKPL---- 56
           ++   + P  F  +        CP C A  L L+ GK G F+GC+AYPEC + +PL    
Sbjct: 581 ALDELLGPHFFPDNGTGHDPRSCPTCNAGRLSLKLGKFGAFIGCSAYPECRFTRPLTTGG 640

Query: 57  --HQNDGHIIKELGVPCPECGHELVLRQGRYGMFI 89
              +      KELG   PE G  + LR+G YG ++
Sbjct: 641 EGEEEVREGPKELGND-PESGLPVTLRKGPYGHYV 674



 Score = 37.7 bits (86), Expect = 6e-07
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 71  CPECGH-ELVLRQGRYGMFIGCSHYPQCHHIESMDSPSQEE 110
           CP C    L L+ G++G FIGCS YP+C     + +  + E
Sbjct: 603 CPTCNAGRLSLKLGKFGAFIGCSAYPECRFTRPLTTGGEGE 643



 Score = 35.0 bits (79), Expect = 4e-06
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 117 CPECGKGHLIERKSRFGKLFYACDAYPKCKF 147
           CP C  G L  +  +FG  F  C AYP+C+F
Sbjct: 603 CPTCNAGRLSLKLGKFGA-FIGCSAYPECRF 632