Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., Similar to C-terminal Zn-finger domain of DNA topoisomerase I from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  219 bits (557), Expect = 3e-62
 Identities = 96/168 (57%), Positives = 129/168 (76%), Gaps = 6/168 (3%)

Query: 20  QSSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLH-QNDGHIIKEL-GVPCPECGHE 77
           ++ PCPQCGA L +R GKHGPFLGC+ YPECDY++PL  Q DGHI+K L G  CPECG  
Sbjct: 11  KNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYVRPLKSQADGHIVKILEGQLCPECGAV 70

Query: 78  LVLRQGRYGMFIGCSHYPQCHHIESMDSPSQEETSPDILCPECGKGHLIERKSRFGKLFY 137
           LVLRQGR+GMFIGCS YPQC H   +D P  +ET+  I CP C +GHL++R+SR+GK+F+
Sbjct: 71  LVLRQGRFGMFIGCSQYPQCEHTVVIDKP--DETA--IACPACQQGHLVQRRSRYGKIFH 126

Query: 138 ACDAYPKCKFALNSKPIAQACAQCGFTVMVEKKSAAGMRYQCANRQCG 185
           +CD YP+C+F +N  P+A  C +C + +++EKK+A G++  CA++QCG
Sbjct: 127 SCDRYPECQFVINFTPVAGECPECHYPLLIEKKTAQGVKRFCASKQCG 174



 Score = 81.6 bits (200), Expect = 7e-21
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 16/118 (13%)

Query: 19  LQSSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHIIKELGVPCPEC--GH 76
           L+   CP+CGA L LR G+ G F+GC+ YP+C++   + + D     E  + CP C  GH
Sbjct: 59  LEGQLCPECGAVLVLRQGRFGMFIGCSQYPQCEHTVVIDKPD-----ETAIACPACQQGH 113

Query: 77  ELVLRQGRYG-MFIGCSHYPQCHHIESMDSPSQEETSPDILCPECGKGHLIERKSRFG 133
            LV R+ RYG +F  C  YP+C  + +    + E       CPEC    LIE+K+  G
Sbjct: 114 -LVQRRSRYGKIFHSCDRYPECQFVINFTPVAGE-------CPECHYPLLIEKKTAQG 163