Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 870 a.a., type I DNA topoisomerase from Erwinia tracheiphila SCR3

 Score = 41.2 bits (95), Expect = 5e-08
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHII--KELGVPCPECGHE---- 77
           C +CG+ + L+ G+ G ++ C    EC   + + +N G I   KE  VP PE   E    
Sbjct: 711 CEKCGSEMHLKMGRFGKYMACIN-DECKNTRKILRN-GDIAPPKEDPVPLPELACEKSDA 768

Query: 78  -LVLRQGRYGMFIGCSHYPQ 96
             VLR G  G+F+  S +P+
Sbjct: 769 HFVLRDGAAGVFLAASTFPK 788



 Score = 38.1 bits (87), Expect = 4e-07
 Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 29/144 (20%)

Query: 19  LQSSPCPQCGAALQLRHGKHGPFLGCTAY---------------PECDYIKPLHQNDGHI 63
           L S  CP CG  + +R    G FLGC+ Y               PE + +  L   D   
Sbjct: 594 LTSIDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNVLEGEDAET 653

Query: 64  -IKELGVPCPECG----HELVLRQGRYGMFIGCSHYPQC--HHIESMDSPSQEETSPDIL 116
                   C +CG      L+  Q +  +   C + P C  + IE  +   +    P + 
Sbjct: 654 NALRARRRCGKCGTAMDSYLIDNQSKLHV---CGNNPGCDGYEIEQGEFRIKGYDGPIVE 710

Query: 117 CPECG-KGHLIERKSRFGKLFYAC 139
           C +CG + HL  +  RFGK + AC
Sbjct: 711 CEKCGSEMHL--KMGRFGK-YMAC 731



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 69  VPCPECGHELVLRQGRYGMFIGCSHY--PQCHHIESMDSPSQEETSPDILCPECGKGHLI 126
           + CP CG ++ +R    G+F+GCS Y  P     +   +   E    ++L  E  + + +
Sbjct: 597 IDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNVLEGEDAETNAL 656

Query: 127 ERKSRFGKLFYACDAY 142
             + R GK   A D+Y
Sbjct: 657 RARRRCGKCGTAMDSY 672