Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., Uncharacterized protein YrdD from Escherichia coli ECRC101

 Score =  214 bits (546), Expect = 5e-61
 Identities = 93/164 (56%), Positives = 127/164 (77%), Gaps = 6/164 (3%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQN-DGHIIKEL-GVPCPECGHELVLR 81
           CP+CGA L +R GKHGPFLGC+ YP CDY++PL  + DGHI+K L G  CP CG  LVLR
Sbjct: 15  CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74

Query: 82  QGRYGMFIGCSHYPQCHHIESMDSPSQEETSPDILCPECGKGHLIERKSRFGKLFYACDA 141
           QGR+GMFIGC +YP+C H E +D P  +ET+  I CP+C  GHL++R+SR+GK F++CD 
Sbjct: 75  QGRFGMFIGCINYPECEHTELIDKP--DETA--ITCPQCRTGHLVQRRSRYGKTFHSCDR 130

Query: 142 YPKCKFALNSKPIAQACAQCGFTVMVEKKSAAGMRYQCANRQCG 185
           YP+C+FA+N KPIA  C +C + +++EKK+A G+++ CA++QCG
Sbjct: 131 YPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174



 Score = 79.3 bits (194), Expect = 4e-20
 Identities = 46/118 (38%), Positives = 62/118 (52%), Gaps = 16/118 (13%)

Query: 19  LQSSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHIIKELGVPCPEC--GH 76
           L+   CP CGA L LR G+ G F+GC  YPEC++ + + + D     E  + CP+C  GH
Sbjct: 59  LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD-----ETAITCPQCRTGH 113

Query: 77  ELVLRQGRYG-MFIGCSHYPQCHHIESMDSPSQEETSPDILCPECGKGHLIERKSRFG 133
            LV R+ RYG  F  C  YP+C    +    + E       CPEC    LIE+K+  G
Sbjct: 114 -LVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE-------CPECHYPLLIEKKTAQG 163