Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 865 a.a., type I DNA topoisomerase from Escherichia coli ECRC100

 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 25/146 (17%)

Query: 15  HEHALQSSPCPQCGAALQLRHGKHGPFLGCTAY---------------PECDYIKPLHQN 59
           ++  L S  CP CG  + +R    G FLGC+ Y               PE + +  L   
Sbjct: 590 NQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGE 649

Query: 60  DGHI-IKELGVPCPECGHEL--VLRQGRYGMFIGCSHYPQC--HHIESMDSPSQEETSPD 114
           D           CP+CG  +   L   +  + + C + P C  + IE  +   +    P 
Sbjct: 650 DAETNALRAKRRCPKCGTAMDSYLIDPKRKLHV-CGNNPTCDGYEIEEGEFRIKGYDGPI 708

Query: 115 ILCPECG-KGHLIERKSRFGKLFYAC 139
           + C +CG + HL  +  RFGK + AC
Sbjct: 709 VECEKCGSEMHL--KMGRFGK-YMAC 731



 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHII--KELGVPCPECGHE---- 77
           C +CG+ + L+ G+ G ++ CT   EC   + + +N G +   KE  VP PE   E    
Sbjct: 711 CEKCGSEMHLKMGRFGKYMACT-NEECKNTRKILRN-GEVAPPKEDPVPLPELPCEKSDA 768

Query: 78  -LVLRQGRYGMFIGCSHYPQ 96
             VLR G  G+F+  + +P+
Sbjct: 769 YFVLRDGAAGVFLAANTFPK 788



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 36/146 (24%)

Query: 69  VPCPECGHELVLRQGRYGMFIGCSHY---------------PQCHHIESMDSPSQEETS- 112
           + CP CG ++ +R    G+F+GCS Y               P+   +  ++    E  + 
Sbjct: 597 IDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGEDAETNAL 656

Query: 113 -PDILCPECG---KGHLIERKSRFGKLFYACDAYPKC--------KFALN--SKPIAQAC 158
                CP+CG     +LI+ K +     + C   P C        +F +     PI + C
Sbjct: 657 RAKRRCPKCGTAMDSYLIDPKRK----LHVCGNNPTCDGYEIEEGEFRIKGYDGPIVE-C 711

Query: 159 AQCGFTVMVEKKSAAGMRYQCANRQC 184
            +CG + M  K    G    C N +C
Sbjct: 712 EKCG-SEMHLKMGRFGKYMACTNEEC 736



 Score = 24.3 bits (51), Expect = 0.007
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 19  LQSSPCPQCGAALQLRHGKHGPFLGCTAYPE 49
           L   PC +  A   LR G  G FL    +P+
Sbjct: 758 LPELPCEKSDAYFVLRDGAAGVFLAANTFPK 788