Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 868 a.a., type I DNA topoisomerase from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 48.1 bits (113), Expect = 4e-10
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 2   SMSRKIDPQLFAAHEHALQSSPCPQCGAA-LQLRHGKHGPFLGCTAYPECDYIKPL---H 57
           +++  +   +F           CP C    L L+  + G F+GC  YPEC Y +P+    
Sbjct: 581 ALNESLGAHIFPDKGDGTDPRECPLCHQGQLSLKTSRFGAFIGCDRYPECKYTRPVASPS 640

Query: 58  QNDGHI---IKELGVPCPECGHELVLRQGRYGMFI 89
             DG      +ELG+  PE G  + L+ GR+G ++
Sbjct: 641 AEDGSAESGDRELGID-PETGQPVQLKIGRFGPYV 674



 Score = 43.9 bits (102), Expect = 8e-09
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 71  CPECGH-ELVLRQGRYGMFIGCSHYPQCHHIESMDSPSQEETSPD 114
           CP C   +L L+  R+G FIGC  YP+C +   + SPS E+ S +
Sbjct: 603 CPLCHQGQLSLKTSRFGAFIGCDRYPECKYTRPVASPSAEDGSAE 647



 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)

Query: 117 CPECGKGHLIERKSRFGKLFYACDAYPKCKFALNSKPIAQACAQCG 162
           CP C +G L  + SRFG  F  CD YP+CK+   ++P+A   A+ G
Sbjct: 603 CPLCHQGQLSLKTSRFGA-FIGCDRYPECKY---TRPVASPSAEDG 644



 Score = 28.1 bits (61), Expect = 5e-04
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 15/79 (18%)

Query: 25  PQCGAALQLRHGKHGPFLGCTAYPECDYIK---------PLHQNDGHIIKELGVP----- 70
           P+ G  +QL+ G+ GP++  T  PE D  K         P   +    ++ L +P     
Sbjct: 657 PETGQPVQLKIGRFGPYVEITP-PEGDKPKRSSLPKDWSPASLSLDQALRLLALPREVGV 715

Query: 71  CPECGHELVLRQGRYGMFI 89
            PE G  +    GRYG F+
Sbjct: 716 HPEDGKMITAGLGRYGPFV 734