Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 892 a.a., DNA topoisomerase I from Agrobacterium fabrum C58

 Score = 56.2 bits (134), Expect = 2e-12
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 11/97 (11%)

Query: 2   SMSRKIDPQLFAAHEHALQSSPCPQCGAA-LQLRHGKHGPFLGCTAYPECDYIKPLHQND 60
           +++  + P +F   E       C  CG   L L+ GK+G F+GC+ YPEC+Y + L  +D
Sbjct: 586 ALNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQL-TSD 644

Query: 61  G--------HIIKELGVPCPECGHELVLRQGRYGMFI 89
           G        +  K LG   P  G EL LR GR+G +I
Sbjct: 645 GAEADAAASNEPKALGAD-PMTGEELTLRSGRFGPYI 680



 Score = 42.0 bits (97), Expect = 3e-08
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 71  CPECGH-ELVLRQGRYGMFIGCSHYPQCHHIESMDSPSQE 109
           C  CG   L L+ G+YG F+GCS+YP+C++   + S   E
Sbjct: 608 CQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDGAE 647



 Score = 34.3 bits (77), Expect = 7e-06
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 106 PSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKF 147
           P +E+ S   +C  CG G+L  +  ++G  F  C  YP+C +
Sbjct: 597 PKREDGSDPRICQVCGTGNLSLKLGKYG-AFVGCSNYPECNY 637