Pairwise Alignments

Query, 371 a.a., DNA-protecting protein DprA from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake from Variovorax sp. SCN45

 Score =  213 bits (541), Expect = 9e-60
 Identities = 137/329 (41%), Positives = 190/329 (57%), Gaps = 25/329 (7%)

Query: 63  QAEQCLQWRSAANN---RYIVTPHCPLYPRLLKEINSSPPVLFIEGIWEAVHD-----PA 114
           Q +   QW    +N   R +VT     YP  L E+   PP+L++ G   A +D      +
Sbjct: 35  QIDLTWQWLHNTDNGNWRRLVTLGDAGYPASLLEMADPPPMLYVLGA--ADYDLTQLGHS 92

Query: 115 VAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDGALQAQGQ------- 167
           +A+VGSRN +  G   AR FA  L ++GL V SGLALG+DG AH GAL A          
Sbjct: 93  IAVVGSRNPTPQGATNARSFARALGEAGLPVVSGLALGVDGAAHQGALDAADAAGDEPRL 152

Query: 168 -TVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGV 226
            TVAV+G+GL +VYP +H+ LA RI  QG +VSE    TPP   +FP+RNR+I+GL+ G 
Sbjct: 153 ATVAVVGTGLDRVYPARHRDLAHRITLQGLIVSELPLGTPPLTQNFPKRNRLIAGLARGT 212

Query: 227 VVVEAAEKSGSLITARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQE 286
           +VVEAA +SGSLITAR  +EQG+EVF +PGSI +  S+G + LIRQGA LV+SV  I +E
Sbjct: 213 LVVEAALQSGSLITARLTSEQGKEVFAIPGSIHSPQSRGCHALIRQGAKLVESVNDILEE 272

Query: 287 LKNALTWSLSEQVPYQAT-----LFSAVQSDEELPFPE--LLANVGIEATPIDILASRTQ 339
           L        +     + +       +A  ++ + P  E  LL  +G +   +D L++RT 
Sbjct: 273 LPPLQLAGGASSASQRKSGNGNGSHTAADAETQAPSAEAPLLEALGFDPVSLDALSARTG 332

Query: 340 IPVQDIMMQLLELELLGHVVAVPGGYIRK 368
                +  +LL LEL GHV  +PGG  ++
Sbjct: 333 WSAAALQAKLLSLELDGHVSRLPGGLFQR 361