Pairwise Alignments

Query, 371 a.a., DNA-protecting protein DprA from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  272 bits (695), Expect = 1e-77
 Identities = 153/325 (47%), Positives = 208/325 (64%), Gaps = 5/325 (1%)

Query: 47  GLKPEQLVFLTTQAAKQAEQCLQWRSAANNRYIVTPHCPLYPRLLKEINSSPPVLFIEGI 106
           GL   Q        A   ++ L+W     + ++      +YP  L+ I+  P  +FI+G 
Sbjct: 43  GLTARQAERFLQLPAGVLDETLRWLELPQHHFLCADS-EIYPPQLRAIDDYPGAIFIDGD 101

Query: 107 WEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDGALQAQG 166
              +H   +A+VGSR+ S  G +  R     LA+SGL +TSGLA GIDG AH+ A+   G
Sbjct: 102 PACLHTCQLAVVGSRSHSWYGERWGRLLCESLAKSGLTITSGLARGIDGVAHNAAVSMGG 161

Query: 167 QTVAVLGSGLAQVYPKQHQGLAERIIAQG-ALVSEFAPHTPPKADHFPRRNRIISGLSLG 225
           ++VAVLG+GLA++YP++H  LAE +IA G A+VSEF   TPP   HFPRRNRIISGLS G
Sbjct: 162 KSVAVLGNGLAKIYPRRHAMLAENLIATGGAVVSEFPLSTPPLPQHFPRRNRIISGLSKG 221

Query: 226 VVVVEAAEKSGSLITARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQ 285
           V+V+EAA +SGSL+TAR A EQGR+VF +PG I +  S+G++ LI+QGA LV + + I +
Sbjct: 222 VLVIEAALRSGSLVTARCALEQGRDVFALPGPIGSPGSEGTHWLIKQGATLVTTPEDILE 281

Query: 286 ELKNALTWSLSEQVPYQATLFSAVQSDEELPFPELLANVGIEATPIDILASRTQIPVQDI 345
            L+  L W        + +L+S  Q +  LPFPELLANVG E TP+D++A R   PV  +
Sbjct: 282 NLQYGLHWL---PTTAENSLYSLNQDEAALPFPELLANVGDEVTPVDVVAERAGQPVPAV 338

Query: 346 MMQLLELELLGHVVAVPGGYIRKGR 370
           + QLLELEL G + AVPGGY+R  R
Sbjct: 339 VAQLLELELAGWIAAVPGGYVRLRR 363