Pairwise Alignments

Query, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., Uncharacterized protein with LysM domain, COG1652 from Variovorax sp. SCN45

 Score =  130 bits (328), Expect = 5e-35
 Identities = 107/366 (29%), Positives = 169/366 (46%), Gaps = 53/366 (14%)

Query: 26  YALLPFTLLSGQVTADEQTPLA-LKPNAPTTYTVVKGDTLWDISALYLDSPWLWPRLWQV 84
           Y + P    + Q TA    PL+ L PNAP  YT+  GDTLW IS LYL  PW WP LW +
Sbjct: 37  YPVTPQQRATAQQTAQTGVPLSELAPNAPDEYTIKPGDTLWAISRLYLLRPWRWPELWGM 96

Query: 85  N-PEIDNPHLIYPGDKLTLFWRDGQPELSLKPMR---------KLSPQVRV--LEKQAVP 132
           N  EI NPH IYPG  L L    G+  L+              KLSP+ R   L   A+P
Sbjct: 97  NINEIANPHRIYPGQVLYLDKTGGRARLTTTRRGGFSGDGGTIKLSPRTRFDSLAGMALP 156

Query: 133 TVQEGLVLPYLQSDRLMAKTALQGSVRVIGSSEGRQYLTKQDQLYISGVHSE-------- 184
           T+   ++ P+L    ++    L  + R++  ++ R  L++ D+ Y  G  +         
Sbjct: 157 TLNPSIIEPFLSEPIVVDADTLDSAPRIVAGNDNRVLLSRGDRAYARGNANSPLLEAPGP 216

Query: 185 -KKWGIYREVAQYQRDDE-VMVALRLVAVGELAMTGGNFSGLSLLE-------------- 228
            + + ++R     +      ++      +G+  +  G  + +  +E              
Sbjct: 217 VQSFRVFRSATPLKDPGTGEILGYEAQYLGKARLQRGESTTVETVEDKDVITVVPATVDI 276

Query: 229 --QNQEILANDIALPEVDLEERQLSTTFYPQPAPAGSEARILGSLEGS--QYAGQNQVVV 284
               +EI A D  LPE     RQL  ++ P+      E RI+ S+ G+  Q+A QNQVV 
Sbjct: 277 IASREEIRAGDRLLPE---PPRQL-LSYVPRAPSTQVEGRII-SVYGNAVQFAAQNQVVA 331

Query: 285 IDQGRSDGVAQGSMFELYQAAVQVKAKQDSSTFLSERSNTDVQLPSVKVGALMVIRPYER 344
           I++G  DG+  G +  + +    +  +  +      R  T ++LP+ ++G LMV R +E+
Sbjct: 332 INKGTRDGIDNGHVLAILKNGETILDRTGA------RKET-IKLPNERIGLLMVFRTFEK 384

Query: 345 FSLALI 350
            S AL+
Sbjct: 385 VSYALV 390