Pairwise Alignments

Query, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  156 bits (395), Expect = 7e-43
 Identities = 103/343 (30%), Positives = 176/343 (51%), Gaps = 26/343 (7%)

Query: 28  LLPFTLLSGQVTADEQTPLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWPRLWQVNPE 87
           LL   LL+    A  Q  + L+   P  YTVV GDTLWDIS  YL  PW WP+LW+ NP+
Sbjct: 5   LLALLLLASAGAAQGQ--VQLRDGFPQQYTVVSGDTLWDISGKYLREPWQWPQLWRANPQ 62

Query: 88  IDNPHLIYPGDKLTLFWRDGQPELSL-----KPMRKLSPQVRVLE-KQAVPTVQEGLVLP 141
           I+NP+LIYPGD LTL + +GQP+L++     +   KLSP++R     +A+P++    +  
Sbjct: 63  IENPNLIYPGDTLTLSYVNGQPQLTVHRGESRGTIKLSPRIRTSPVAEAIPSIPLKSINS 122

Query: 142 YLQSDRLMAKTALQGSVRVIGSSEGRQYLT-KQDQLYISGVHSEKK--WGIYREVAQY-- 196
           +L S+R++ K         I + +  + L+   D+++  G    ++  +GI+R+   Y  
Sbjct: 123 FLLSNRIVDKAEDFDKAPYIVAGDAERVLSGTGDRIFARGHFDPEQPVYGIFRQGKVYTD 182

Query: 197 -QRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEILANDIALPEVDLEERQLSTTFY 255
            Q  + + +    +  GE+  T G+ + L+L    QE+   D        EER +++TF 
Sbjct: 183 PQTKEFLGINADDIGGGEIVATEGDVATLALQRTTQEVRLGDRLFGG---EERSINSTFM 239

Query: 256 PQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFELYQAAVQVKAKQDSS 315
           P       +  I+    G    G   VV +++G+ DG+A+G++  + +    V+      
Sbjct: 240 PSAPKRSIDGLIIDVPRGVTQIGVMDVVTLNKGKRDGLAEGNVLAVMKTGETVR------ 293

Query: 316 TFLSERSNTDVQLPSVKVGALMVIRPYERFSLALITNSSAPIS 358
                 +   +++P  + G LMV R Y++ S  L+ N+S  ++
Sbjct: 294 ---DRITGQPLKIPDERAGLLMVFRTYDKLSYGLVLNASRSLA 333