Pairwise Alignments

Query, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., LysM domain. from Kangiella aquimarina DSM 16071

 Score =  187 bits (475), Expect = 4e-52
 Identities = 115/320 (35%), Positives = 176/320 (55%), Gaps = 19/320 (5%)

Query: 48  LKPNAPTTYTVVKGDTLWDISALYLDSPWLWPRLWQVNPEIDNPHLIYPGDKLTLFWRDG 107
           L+ N P TY V KGDTLWDISA +L  PWLWP +W VNP ++NPHLIYPGD L L + DG
Sbjct: 25  LRDNHPDTYVVQKGDTLWDISATFLTDPWLWPEIWHVNPNVENPHLIYPGDILKLVYIDG 84

Query: 108 QPEL--SLKPMRKLSPQVRVL-EKQAVPTVQEGLVLPYLQSDRLMAKTALQGSVRVIGSS 164
           +P +  +     KL P+ RVL E +A+ T+   ++ PYL  + ++  +    +  V+   
Sbjct: 85  KPYIVKASDGTIKLRPEARVLSEGEAITTIPLSMIKPYLIDEMVVEPSVFDTAPYVVDLE 144

Query: 165 EGRQYL-TKQDQLYISGVH--SEKKWGIYREVAQY---QRDDEVMVALRLVAVGELAMTG 218
           E R+      D+LYI G+   S   +GIYR+  +Y   + D+ + V  R +A G +    
Sbjct: 145 EDRKIAGAYGDRLYIRGISAGSGGSFGIYRKGKEYRDPETDELLGVEARYLANGNITRE- 203

Query: 219 GNFSGLSLLEQNQEILANDIALPEVDLEERQLSTTFYPQPAPAGSEARILGSLEGSQYAG 278
           G+ S L++ +   EIL  D+ALP     E  L   + P+      +A+I+   +G    G
Sbjct: 204 GDPSTLTVKKSKLEILKGDVALPR---NENPLPPVYAPRAPETDIKAQIISVYDGVTQIG 260

Query: 279 QNQVVVIDQGRSDGVAQGSMFELYQAAVQVKAKQDSSTFLSER-SNTDVQLPSVKVGALM 337
           Q  VV +++G  DG+ +G +  +YQ     + K+      ++R  + +V LP    G LM
Sbjct: 261 QYNVVTLNKGSRDGLEEGHVLSVYQ-----RGKKIHDEIAAQRGGDAEVTLPEEHAGTLM 315

Query: 338 VIRPYERFSLALITNSSAPI 357
           + R Y++ SLALI N++ PI
Sbjct: 316 IFRTYDKVSLALIMNATRPI 335