Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Rhodanobacter sp000427505 FW510-R12

 Score =  322 bits (825), Expect = 1e-92
 Identities = 178/429 (41%), Positives = 249/429 (58%), Gaps = 7/429 (1%)

Query: 2   NVRAAAASALYQVVDLGHSLSNALPAAQQQIR-PRDHALLQEICYGVLRQLPRLESISQA 60
           + RA AA  L ++   G SL   +  +  ++  PRD ALL  +     R   R +     
Sbjct: 4   DTRALAARGLAEIALRGASLREVMERSAPRLPDPRDRALLMALLSEGARWWLRFDPAVDD 63

Query: 61  LMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRN 120
           L+ K L+ K    H L+++GL QL  + +  +AAV  TVE  + LK P+L GL+NAVLR 
Sbjct: 64  LLEKSLRHKDPAVHALLVLGLVQLEILELQDYAAVAATVEAVRTLKRPQLAGLVNAVLRR 123

Query: 121 YQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHH 180
           +QR++E   A+  +    R+ HP WL   L+  +P+Q + ++ A+N++ P+ LR+N +  
Sbjct: 124 WQRERESRLAKLDARPQTRHAHPAWLATALERDWPQQAEAVMAADNNEPPLMLRINRRRS 183

Query: 181 TRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLA 240
            R    A L+ AG   T H    DAL L    DV +LPGF +G  +VQD AAQ+A     
Sbjct: 184 ERETLIARLQAAGYAATAHPWLADALVLPHSSDVTRLPGFDDGLFAVQDGAAQVAADLAD 243

Query: 241 PQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVICGD 300
              G  +LD CAAPGGK  H+LER  +  + A++ D +R +R+R+NL RL L A+++ GD
Sbjct: 244 LHDGLRVLDACAAPGGKACHLLERA-DIDLTALEFDASRAERIRQNLMRLRLDAKIVTGD 302

Query: 301 ARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQ 360
           A  P+ WW G  F+RILLDAPCSA+GV+RR PD++  RR  DIAA+   QR +L A+W  
Sbjct: 303 AGAPKGWWNGRPFERILLDAPCSASGVLRRRPDVRLHRRESDIAAMQAQQRRLLAALWPL 362

Query: 361 LKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVG-----SEPAQPGRQILPGEEAMD 415
           L PGG L+Y TCS+   EN   V   L    DA+ V       +PA  G QILPG+  +D
Sbjct: 363 LAPGGRLLYVTCSVLRAENEAIVGKLLAAQADAQAVPFTLPVGQPAAVGWQILPGDGDLD 422

Query: 416 GFYYAVLSK 424
           G YYAVL K
Sbjct: 423 GMYYAVLQK 431