Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., Ribosomal RNA small subunit methyltransferase B from Xanthobacter sp. DMC5

 Score =  112 bits (279), Expect = 3e-29
 Identities = 95/321 (29%), Positives = 137/321 (42%), Gaps = 47/321 (14%)

Query: 139 RYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTP 198
           R  +P WL   L+  + +   +   A  ++AP+ LR+N     + E +A+  +   +  P
Sbjct: 123 RGDYPQWLHASLRHVFGDSVVEEGAALAARAPLDLRINT---LKGEPEAVKAELSHLH-P 178

Query: 199 HAQAEDALCLETPCD-------VHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCC 251
                  L L    D       V   P F  G V VQD  +QLA     P  G  +LD C
Sbjct: 179 EPCRFSPLALRIKLDSEGKAPPVSAEPAFLRGEVEVQDEGSQLAAILARPLPGGQVLDLC 238

Query: 252 AAPGGKTAHILERTP-ESQVVAIDCDETRLKRVRENLQRLELT---------AQVICGDA 301
           A  GGKT         + Q+ A D D  RLK + E L R  +          A+ + GD 
Sbjct: 239 AGAGGKTLEFAALMDNKGQIYAHDSDIRRLKPMHERLARAGVRNVQVRSPRGAEDVLGDL 298

Query: 302 RYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQL 361
                     + D +L+DAPC+ TG  RR+PD KW  R   +A     Q +IL+     +
Sbjct: 299 E--------GKMDLVLVDAPCTGTGTWRRNPDAKWRVRPGALAQRTAEQAKILEQAAHYV 350

Query: 362 KPGGSLVYATCSITPQENRLQVKAFLERTPD----------ARLVGSEPA--------QP 403
           +PGG L Y TCS+  +EN  QV+A L +  D            L  S PA        + 
Sbjct: 351 RPGGRLAYVTCSLLDEENGAQVRALLNKREDFSPVSPTENVLALGASGPALAEAALTSRE 410

Query: 404 GRQILPGEEAMDGFYYAVLSK 424
           G  + P     DGF+ +V+ +
Sbjct: 411 GLLMSPRRTGTDGFFVSVMKR 431