Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Ribosomal RNA small subunit methyltransferase B from Xanthobacter sp. DMC5

 Score =  200 bits (508), Expect = 9e-56
 Identities = 152/406 (37%), Positives = 203/406 (50%), Gaps = 26/406 (6%)

Query: 1   MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQA 60
           ++ RA A  AL  V+  G +L  AL      + PRD AL   I    LR+L  L ++   
Sbjct: 27  LSARAVAVDALEAVLRQGAALEEALDGPA--LEPRDRALAYRIVATALRRLGTLRTVLGK 84

Query: 61  LMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQ-DLKGPRLRGLINAVLR 119
           LM +           ++L G  Q+ FM +P+HAAVG +V+ A+ D       GL+NAVLR
Sbjct: 85  LMERGFPKSAPRLESVLLAGATQILFMDVPSHAAVGLSVDLARADRSTVGFAGLVNAVLR 144

Query: 120 NYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESY-PEQWQQIVEANNSKAPMWLRVNHQ 178
              R+ E L A     D      P WL +   ++Y  E  + +   +  + P+ + V   
Sbjct: 145 RVAREGEALMAGV---DPDFADTPDWLRQRWIKAYGAETARAMATMHRVEPPLDITVK-- 199

Query: 179 HHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTY 238
             T  E  A      ++ T   +   A        V  LPGFAEG   VQDAAA L    
Sbjct: 200 --TDPESWAGKLSGEVLPTGTVRILQA------GPVRALPGFAEGEWWVQDAAAALPARL 251

Query: 239 LAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVIC 298
           L    G  + D CAAPGGKTA ++     +QV A+D    RL R+R+NL RL L A V+ 
Sbjct: 252 LGKVDGLKVADLCAAPGGKTAQLV--AAGAQVTAVDRSGARLTRLRDNLARLGLAATVVE 309

Query: 299 GDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMW 358
           GDA      + G  FD +LLDAPCSATG +RRHPDI   +R  DI  LA LQ  +LD   
Sbjct: 310 GDA----ATFAGGPFDAVLLDAPCSATGTLRRHPDIAVSKRPSDIPTLATLQARLLDHAI 365

Query: 359 QQLKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQPG 404
             +KPGG +VY+TCS+ P+E   QV+  L    D   V  EP + G
Sbjct: 366 DLVKPGGLVVYSTCSLEPEEGEAQVERLLAARKD---VEREPLRAG 408