Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., 16S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  397 bits (1021), Expect = e-115
 Identities = 221/430 (51%), Positives = 268/430 (62%), Gaps = 6/430 (1%)

Query: 1   MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQA 60
           MN R AAA AL  V+    SL+++LP    ++  RD    Q++ +G  R  PRL +++  
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEDRDRGFTQDLAFGTARWQPRLSALAAT 60

Query: 61  LMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRN 120
           L+ KP K        L+LVGLYQL + R+PAHAA+GETV  A  LK P  + L+NAVLR 
Sbjct: 61  LLQKPFKAADADVEALLLVGLYQLLYTRVPAHAAIGETVGCADKLKKPWAKALLNAVLRR 120

Query: 121 YQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHH 180
            QR+ E L A+       R  HP WL K LK  +PEQW+ I  ANN+  PM LRVN +HH
Sbjct: 121 AQRESEALLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHH 180

Query: 181 TRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLA 240
           +R  Y  LL  AGI  TP   + D + LE   DV  LPGFAEGW+SVQD AAQLA   L 
Sbjct: 181 SRDAYLQLLTDAGIGATPCVYSVDGIVLEAATDVRSLPGFAEGWISVQDEAAQLAADLLD 240

Query: 241 PQAGELILDCCAAPGGKTAHILERTPE-SQVVAIDCDETRLKRVRENLQRLELTAQVICG 299
              G+ +LD C APGGKT HILE   +   VVA+D +  RL RVRENL RL L+A++I  
Sbjct: 241 LAPGQRVLDACCAPGGKTCHILEVEKDLVGVVAVDLEAKRLVRVRENLARLGLSAELIAA 300

Query: 300 DARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQ 359
           D R    WW G+ F RILLDAPCSATGVIRRHPDIK  R+ DDIAALA LQ E+LDA+W 
Sbjct: 301 DGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALAVLQGELLDALWP 360

Query: 360 QLKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSEPA----QP-GRQILPGEEAM 414
            L+ GG L+YATCS  P EN   ++AFL RT  AR +         QP GRQ+L  E   
Sbjct: 361 TLEVGGILLYATCSTLPTENTEVIEAFLARTSGARELDLATTAGIRQPHGRQLLAQEGGH 420

Query: 415 DGFYYAVLSK 424
           DGFYYA L K
Sbjct: 421 DGFYYAKLIK 430