Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) from Variovorax sp. SCN45

 Score =  253 bits (646), Expect = 8e-72
 Identities = 167/431 (38%), Positives = 231/431 (53%), Gaps = 34/431 (7%)

Query: 18  GHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQALMGKPLKGKQRVFHFLI 77
           G S S A  A +  +RP     +Q + + VLR L R E++ + L  +             
Sbjct: 12  GTSGSVAFEAVEPALRPG----VQALGFQVLRWLGRAEALRRHLAKRTPPPLPDALLCTA 67

Query: 78  LVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRG-LINAVLRNYQRDQEGLDAQATSHD 136
           L   +  +         V + VE A+     R +   INA LR + R+++ L A   S  
Sbjct: 68  LALAWDGTRAPYEPFTLVDQAVEAAKRNPATRAQASFINACLRRFLRERDELVAVTDSEP 127

Query: 137 AGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVT 196
             ++ HP W ++ LK  +P  WQ+++ A+N++APM LRVN +  T A Y   LE AG+  
Sbjct: 128 VAQWNHPRWWIERLKRDHPRDWQRVLAADNAQAPMTLRVNARKSTAASYLVELEAAGLSA 187

Query: 197 TPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYL-------APQAGEL-IL 248
           T    +   L    P  V QLPGFAEG  SVQDAAAQ+A   L       AP    L +L
Sbjct: 188 TRVGPSGLQLARARP--VQQLPGFAEGASSVQDAAAQMAAPLLLEGLLPAAPGGVPLRVL 245

Query: 249 DCCAAPGGKTAHILERT-PES-QVVAIDCDETRLKRVRENLQRLELTAQVICGDARYPQQ 306
           D CAAPGGKTAH+LE   P++  V A++ D  R +R+ E L R+ L A+V+  DA  P  
Sbjct: 246 DACAAPGGKTAHLLELAGPDAIDVTALEVDAVRSRRIDETLARIGLKARVLVADAARPAD 305

Query: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGS 366
           WW    FD ILLDAPC+A+G++RRHPD++WLRR  D A L+  Q  +L A+W  ++ GG 
Sbjct: 306 WWDRTPFDAILLDAPCTASGIVRRHPDVRWLRRESDTAQLSAQQAALLAALWPLVRTGGR 365

Query: 367 LVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQPGRQILP--GEEAM---------- 414
           L+Y TCS+  +E   Q+ AFL    DARL+ S    PG  +LP  G  A           
Sbjct: 366 LLYCTCSVFREEGSQQIDAFLVHNTDARLLPS----PG-HLLPQSGSNARGVPDNPSGDH 420

Query: 415 DGFYYAVLSKQ 425
           DGF+YA+L K+
Sbjct: 421 DGFFYALLEKR 431