Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) from Sphingobium sp. HT1-2

 Score =  153 bits (386), Expect = 1e-41
 Identities = 133/408 (32%), Positives = 179/408 (43%), Gaps = 41/408 (10%)

Query: 4   RAAAASALYQVVDLGHSLSNALPAAQQQIRPR-DHALLQEICYGVLRQLPRLESISQALM 62
           R AA   L  V+  G  L  AL  A Q +  R D AL+  I    LR LP L+++     
Sbjct: 23  RRAALKLLDAVLRRGDPLEIALHGATQGLADRADRALVHAIVAETLRHLPDLDALIDGAT 82

Query: 63  GKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNYQ 122
            +PL    +    ++ + L Q+  +    HAA+   +       GPR   L++ V     
Sbjct: 83  KQPLPDDAKA-RMVLRIALIQVLALGTAPHAAIATALPLVDG--GPRK--LVHGVFGTVT 137

Query: 123 RDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTR 182
           R +  L    T            L   + E +  QW          A M L   H +  R
Sbjct: 138 RAEPSLPVPPT------------LPAEVAERWTGQWG---------AAMPLAAAHAYAVR 176

Query: 183 AEYQ-ALLEQAGIVTTPHAQAEDALC-----LETPCDVHQLPGFAEGWVSVQDAAAQLAL 236
                +L + A       A    +       L     V  LPGFAEG   VQD AA    
Sbjct: 177 PPVDISLRDPAETGKWVEAMGGSSFAPGHVRLPEGAVVPDLPGFAEGAWWVQDIAASCPA 236

Query: 237 TYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQV 296
             L    G  +LD CAAPGGKT  +        V A+D  + RL+R+ ENL R  L+A V
Sbjct: 237 RLLGAGEGRTVLDLCAAPGGKTMQLA--AAGWAVTAVDQSKKRLERLSENLARTGLSADV 294

Query: 297 ICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDA 356
           +  D R   QW      D +LLDAPC+ATG+ RRHPD+        IA LA+LQ E+L  
Sbjct: 295 VQADLR---QWAPDAPVDALLLDAPCTATGIYRRHPDVLHRIGPRQIAELADLQGELLAR 351

Query: 357 MWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQPG 404
           +   +KPGG+L+YATCS+   E   Q+  FL   PD ++    P Q G
Sbjct: 352 VADWVKPGGTLIYATCSLEQAEGEAQMTRFLAARPDFQV---RPVQAG 396