Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., Ribosomal RNA small subunit methyltransferase B from Pseudomonas putida KT2440

 Score =  404 bits (1039), Expect = e-117
 Identities = 226/430 (52%), Positives = 273/430 (63%), Gaps = 6/430 (1%)

Query: 1   MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQA 60
           MN R AAA AL  V+    SL+++LPA   ++  RD  L Q++ +G  R  PRL+ ++  
Sbjct: 1   MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQ 60

Query: 61  LMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRN 120
           L+ KP K        L+LVGLYQL + RIPAHAA+GETV  A  LK P  +GL+NAVLR 
Sbjct: 61  LLQKPFKAADADVQALLLVGLYQLFYTRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRR 120

Query: 121 YQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHH 180
            QR+ E L A        R  HP WL K LK  +PEQW+ I  ANN+  PM LRVN +HH
Sbjct: 121 AQREGEELLAGMERDPVVRTAHPRWLQKALKAFWPEQWEAICAANNAHPPMILRVNRRHH 180

Query: 181 TRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLA 240
           +R  Y ALL +AGI  +    + D + L   CDV  LPGFAEGWVSVQD AAQL+   L 
Sbjct: 181 SRDAYLALLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLE 240

Query: 241 PQAGELILDCCAAPGGKTAHILE-RTPESQVVAIDCDETRLKRVRENLQRLELTAQVICG 299
              G+ +LD C APGGKT H+LE     + +VAID +  RL RVRENL RL+L A++I  
Sbjct: 241 LAPGQRVLDACCAPGGKTCHLLEAEAGLANMVAIDLEAKRLTRVRENLDRLQLDAELIAC 300

Query: 300 DARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQ 359
           DAR    WW G+ F RILLDAPCSATGVIRRHPDIK  R+ADDI ALA LQ E+LDA+W 
Sbjct: 301 DARDTASWWDGKPFQRILLDAPCSATGVIRRHPDIKMTRQADDIPALATLQGELLDALWP 360

Query: 360 QLKPGGSLVYATCSITPQENRLQVKAFLERTPDAR----LVGSEPAQP-GRQILPGEEAM 414
            L+ GG L+YATCS  P EN   +KAFL RTP AR       +   QP GRQ+L  E   
Sbjct: 361 TLEVGGMLLYATCSTLPTENTEVIKAFLARTPGARELDLATEAGLRQPHGRQLLAQEGGH 420

Query: 415 DGFYYAVLSK 424
           DGFYYA L K
Sbjct: 421 DGFYYAKLIK 430