Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., Fmu (Sun) /eukaryotic nucleolar NOL1/Nop2p; tRNA and rRNA cytosine-C5-methylases from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  141 bits (356), Expect = 3e-38
 Identities = 101/307 (32%), Positives = 146/307 (47%), Gaps = 20/307 (6%)

Query: 139 RYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTP 198
           R+  P WL   L+E   +++  +  + N  AP+ LRVN     R    A L++AG+    
Sbjct: 115 RHNLPDWLATALREQVGDEFDALAASLNQPAPLDLRVNVLKAKRDAALAGLQKAGLTGAA 174

Query: 199 HAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKT 258
              +   + L+    + +LP F +G V VQD  +QL    L  + GE+++D CA  GGKT
Sbjct: 175 TPYSPLGIRLQGKPSLAKLPAFVQGEVEVQDEGSQLLALLLDAKRGEMVVDFCAGAGGKT 234

Query: 259 AHILERTPES-QVVAIDCDETRLKRVRENLQRLELTA--QVICGDARYPQQWWQGEQFDR 315
             I      S ++ A D    RL  ++  L R  L+    V     R  +      + DR
Sbjct: 235 LAIGAAMRNSGRLYAFDTSGHRLDALKPRLARSGLSNVHPVAIAHERDDRIKRLAGKIDR 294

Query: 316 ILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSIT 375
           +L+DAPCS  G +RR PD+KW +    +AA AELQ  IL++  + LKPGG LVYATCS+ 
Sbjct: 295 VLVDAPCSGLGTLRRSPDLKWRQTPQTVAAQAELQLAILNSAARLLKPGGRLVYATCSLL 354

Query: 376 PQENRLQVKAFLERTPD------------ARLVGSEPAQPGR-----QILPGEEAMDGFY 418
             EN     AF    PD              + G+     G      ++ P   A DGF+
Sbjct: 355 QAENEAVCAAFGPAHPDFEPVPVAGLLEGVHVSGASGLCAGENGDWLRLWPHRHATDGFF 414

Query: 419 YAVLSKQ 425
            AV  K+
Sbjct: 415 AAVWRKR 421