Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  304 bits (779), Expect = 3e-87
 Identities = 185/442 (41%), Positives = 248/442 (56%), Gaps = 34/442 (7%)

Query: 3   VRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQALM 62
           +R  AA  L   V+ G SLS ALP     +RP     +Q + +  LR L    ++   L+
Sbjct: 1   LRHTAACVL--AVEQGRSLSEALPEVPPALRPG----VQALTFHALRHLGTARALVARLV 54

Query: 63  G-KPLKGKQRVFHFLI--LVGLYQLSFMRIPAHAAVGETVEGA-QDLKGPRLRGLINAVL 118
             KP    Q +    +  L+ +      R PAH  V + V+ A QD +  R    INA L
Sbjct: 55  ERKPAPPAQALMGSAVALLLDVADERAPRYPAHTVVNQAVQAARQDRRTERQAAFINACL 114

Query: 119 RNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQ 178
           R + R+++ L A+  +    R+ HP W ++ L+  +PEQW+ I++ANN   PM LRVN +
Sbjct: 115 RRFLRERDDLLARVAADPVARWNHPLWWIERLQRDHPEQWRAILDANNQPGPMALRVNRR 174

Query: 179 HHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLA--- 235
              RA Y   LE  G+  TP     D L L  P  V +LPGFA+G  SVQDAAAQ+A   
Sbjct: 175 RVDRAAYLQALEAVGLAATP--AGSDGLVLGAPQPVERLPGFAQGHCSVQDAAAQMAADQ 232

Query: 236 -LTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294
            LT       + +LD CAAPGGKTAH+LER  + +++A+D D  R +R+ + LQRL L A
Sbjct: 233 LLTGRTWSPSDRVLDACAAPGGKTAHLLERA-DLKLLALDVDPLRCERISDTLQRLGLQA 291

Query: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354
            V C DA  P  WW G+ FD ILLDAPC+A+G++RRHPD++WLRRA D+ AL   QR +L
Sbjct: 292 TVRCADAARPAAWWDGQLFDAILLDAPCTASGIVRRHPDVRWLRRASDVDALVATQRGLL 351

Query: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQPGRQILPGEEA- 413
           DA+W  L+PGG L+YATCS+   E   QV+AFL R  DA         PG  +LPG  A 
Sbjct: 352 DALWPLLQPGGRLIYATCSVFRAEGAGQVQAFLGRHTDA----VHRPSPG-HLLPGSAAP 406

Query: 414 -----------MDGFYYAVLSK 424
                       DGF+YA + K
Sbjct: 407 SGEFNDNPPGGYDGFFYARIDK 428