Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., Ribosomal RNA small subunit methyltransferase B from Methylophilus sp. DMC18

 Score =  133 bits (335), Expect = 9e-36
 Identities = 118/416 (28%), Positives = 190/416 (45%), Gaps = 48/416 (11%)

Query: 30  QQIRPRDHALLQEICYGVLRQLPRLESISQALMGKPLKGKQRVFHFLILVGLYQLSFMRI 89
           +++  +D A + E  YGVLR+   L  +S   +G+P + +      + L+   +   +R 
Sbjct: 35  RELGTKDRAWVAETAYGVLRRYRYLREVS---VGEPDEQEDTRKLIIALLLKIEGKSIRD 91

Query: 90  PAHAAVGETVEGAQDLKGPRLRGLINAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKL 149
                     E A  +K     G   AVL + +                      W  + 
Sbjct: 92  LDEMLDERQKEWAVTIKAKNSEGFAPAVLADVR---------------------DWFWQK 130

Query: 150 LKESYPE-QWQQIVEANNSKAPMWLRVNHQHHTRAEYQA-LLEQAGI---VTTPHAQAED 204
           L E Y E +   I  +   +A + LRVN    +R E  A +L +  +   V TP   +  
Sbjct: 131 LVEQYGETEAMTICRSMFEQASLDLRVNTIKASREEVLARMLAENTVKDNVITPTPYSPV 190

Query: 205 ALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKT---AHI 261
            + + +  ++ +   F EG + VQD  +QL    +AP+ G+++ D CA  GGKT     +
Sbjct: 191 GIRMGSRLNIGKHILFTEGKIEVQDEGSQLLSYLVAPKRGQMVADLCAGAGGKTLALGAL 250

Query: 262 LERTPESQVVAIDCDETRLKRVRENLQRLELT---AQVICGDARYPQQWWQGEQFDRILL 318
           ++ T   ++ A D  E RL  + + L+R  L+   AQ+I  +     +   G+ FDR+L+
Sbjct: 251 MKNT--GRLYAFDVSEKRLNNLGQRLKRSGLSNLQAQLINNENDLKLKRLNGK-FDRVLV 307

Query: 319 DAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQE 378
           DAPCS  G +RR+PD+KW +  +D+A L   Q  IL    +  K GG +VYATCS+  +E
Sbjct: 308 DAPCSGLGTLRRNPDLKWRQAEEDVAELNVKQTNILARAAKLCKAGGRVVYATCSLLREE 367

Query: 379 NRLQVKAFLERTPDARLVGSEPAQPGRQI----------LPGEEAMDGFYYAVLSK 424
           N    +AFL   PD +L+ +      + I          LP     DGF+ AV  K
Sbjct: 368 NEAIAEAFLAAHPDFKLIPANEVLAQQNIAMDTGDYLKLLPHLHGTDGFFAAVFEK 423