Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., putative nucleolar proteins (VIMSS) from Escherichia coli BW25113

 Score = 97.1 bits (240), Expect = 1e-24
 Identities = 74/236 (31%), Positives = 111/236 (47%), Gaps = 23/236 (9%)

Query: 173 LRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPC-DVHQLPGFAE---GWVSVQ 228
           +RVN    + A++  L    G   TP    E+   +E    D   L   AE   G   +Q
Sbjct: 41  IRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQ 100

Query: 229 DAAAQL--ALTYLAPQAGELILDCCAAPGGKTAHILER-TPESQVVAIDCDETRLKRVRE 285
           +A++ L  A  +    A + ++D  AAPG KT  I  R   E  ++A +   +R+K +  
Sbjct: 101 EASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHA 160

Query: 286 NLQRLELTAQVICGDARYPQQWWQG--------EQFDRILLDAPCSATGVIRRHPDIKWL 337
           N+ R        CG +      + G        E FD ILLDAPCS  GV+R+ PD    
Sbjct: 161 NISR--------CGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN 212

Query: 338 RRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
              +    +A  QRE++D+ +  L+PGG+LVY+TC++  +EN        E  PDA
Sbjct: 213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDA 268