Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., ribosomal RNA small subunit methyltransferase RsmB from Kangiella aquimarina DSM 16071

 Score =  346 bits (888), Expect = e-100
 Identities = 197/429 (45%), Positives = 261/429 (60%), Gaps = 10/429 (2%)

Query: 3   VRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQALM 62
           +R  A  AL+ +   G S ++ L +   + +  D+   + +  G  R   RLE+I+  L+
Sbjct: 15  LRKQACLALHAIAFEGRSANDVLSSISFE-QGSDNGFFRALVLGSCRYFIRLEAIASQLL 73

Query: 63  GKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNYQ 122
            KP K K R    LI++GLYQL F R+P HAA+ ETV   Q LK      ++N VLRN+ 
Sbjct: 74  QKPFKPKDRDLLCLIIIGLYQLEFSRVPDHAAISETVSVCQQLKKNWATNVVNGVLRNFI 133

Query: 123 RDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTR 182
           R +  L A+  S+   ++  P WL+ +LK  Y  Q + ++ A N +APM LRVN Q   R
Sbjct: 134 RQEADLLAKVDSNWDTKFALPDWLISMLKPYYKGQMESLMSAINEQAPMTLRVNRQKIGR 193

Query: 183 AEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQ 242
             Y   L + G+  T H  A + L LE P +V QLP FA+G+VSVQDAAAQLA   L+P 
Sbjct: 194 DRYLEQLLEQGLSATAHPIAANGLVLEHPVNVEQLPHFADGYVSVQDAAAQLAAAILSPT 253

Query: 243 AGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVICGDAR 302
               +LD CAAPGGKT H+LE     ++ A D D  R +R+ ENL RL+L A+V C D  
Sbjct: 254 PNSTVLDACAAPGGKTCHLLELFDSIELTACDIDHDRCQRISENLLRLQLRAKVDCQD-- 311

Query: 303 YPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLK 362
                +   QFD ILLDAPCSATGVIRRHPDIK LR+A+DI  L  LQ++IL+ +W +LK
Sbjct: 312 LTDSNFTDGQFDAILLDAPCSATGVIRRHPDIKLLRKANDIDQLVHLQQQILEHLWSKLK 371

Query: 363 PGGSLVYATCSITPQENRLQVKAFLERTPDARL--VGSEPAQ-----PGRQILPGEEAMD 415
           PGG L+YATCSI PQEN  Q+  FLE   DA+L  + SE  Q      G Q++PG+ +MD
Sbjct: 372 PGGHLLYATCSILPQENEQQIDRFLESHSDAKLLPLSSEIQQLSHSKTGCQLIPGQLSMD 431

Query: 416 GFYYAVLSK 424
           GFYYA+L K
Sbjct: 432 GFYYALLEK 440