Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Erwinia tracheiphila SCR3

 Score =  483 bits (1242), Expect = e-141
 Identities = 251/424 (59%), Positives = 303/424 (71%), Gaps = 2/424 (0%)

Query: 2   NVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQAL 61
           N+RA AA  + +VV+ G SLSN LPAAQ+    +D ALLQE+ YGVLR LP+LE +   L
Sbjct: 6   NLRALAAQTMEKVVEQGLSLSNVLPAAQRNRSEKDQALLQELSYGVLRTLPQLEWLISQL 65

Query: 62  MGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNY 121
           M +P+ GKQR  HFLI+ GLYQL F RIPAHAA+ ETVEGA  LK P+L+GLIN VLR +
Sbjct: 66  MERPMTGKQRSIHFLIMTGLYQLIFTRIPAHAALAETVEGAVALKRPQLKGLINGVLRQF 125

Query: 122 QRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHT 181
           QR QE L    +  +   Y HP WLL  LK+++PEQW+ IV+ANN + PMWLRVN QHHT
Sbjct: 126 QRKQEDLMLTMSKVEQN-YLHPKWLLDRLKQAWPEQWRDIVDANNQRPPMWLRVNRQHHT 184

Query: 182 RAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAP 241
           R  +  LL++ G    PH    DAL L++PC V+QLPGF +GWVSVQDA+AQ  +  L+P
Sbjct: 185 RDAWLELLKEQGKSAEPHPVHPDALRLQSPCPVNQLPGFEKGWVSVQDASAQGCVALLSP 244

Query: 242 QAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVICGDA 301
           Q  E ILD CAAPGGKT HILE  P ++V A+D D  RL RVRENLQRL ++A V  GDA
Sbjct: 245 QNHEAILDLCAAPGGKTTHILEAAPLARVTAVDIDAQRLARVRENLQRLNMSADVKSGDA 304

Query: 302 RYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQL 361
             P++W    +FDRILLDAPCSATGVIRRHPDIKWLRR  DI+ LA LQ++ILDA+W  L
Sbjct: 305 TTPEKWCGQTRFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAALQQQILDAIWPYL 364

Query: 362 KPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGS-EPAQPGRQILPGEEAMDGFYYA 420
           KPGG L+YATCSI P+EN LQ+ AFL R  DA+L  +     PG QI P     DGFYYA
Sbjct: 365 KPGGILLYATCSILPEENHLQIAAFLARNIDAQLKETGNTEHPGLQIFPEPAGGDGFYYA 424

Query: 421 VLSK 424
            L+K
Sbjct: 425 KLTK 428