Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Escherichia coli ECRC62

 Score = 97.8 bits (242), Expect = 6e-25
 Identities = 74/236 (31%), Positives = 111/236 (47%), Gaps = 23/236 (9%)

Query: 173 LRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPC-DVHQLPGFAE---GWVSVQ 228
           +RVN    + A++  L    G   TP    E+   +E    D   L   AE   G   +Q
Sbjct: 43  IRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQ 102

Query: 229 DAAAQL--ALTYLAPQAGELILDCCAAPGGKTAHILER-TPESQVVAIDCDETRLKRVRE 285
           +A++ L  A  +    A + ++D  AAPG KT  I  R   E  ++A +   +R+K +  
Sbjct: 103 EASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHA 162

Query: 286 NLQRLELTAQVICGDARYPQQWWQG--------EQFDRILLDAPCSATGVIRRHPDIKWL 337
           N+ R        CG +      + G        E FD ILLDAPCS  GV+R+ PD    
Sbjct: 163 NISR--------CGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN 214

Query: 338 RRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
              +    +A  QRE++D+ +  L+PGG+LVY+TC++  +EN        E  PDA
Sbjct: 215 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDA 270