Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., Ribosomal RNA small subunit methyltransferase B from Azospirillum sp. SherDot2

 Score =  135 bits (339), Expect = 3e-36
 Identities = 95/300 (31%), Positives = 145/300 (48%), Gaps = 18/300 (6%)

Query: 143 PGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQA 202
           P W    ++ S  +++   +E     AP+ LR+N     +      L +A I       +
Sbjct: 137 PDWAEAAMRASLGDRFGVEMEKLLEAAPLDLRINPLKANQQSAIKALAKAQITAETTQWS 196

Query: 203 EDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHIL 262
              L ++    +  +  F +G V +QD  +QL    +AP+ G  ++D CA  GGKT  + 
Sbjct: 197 PLGLRVKGRPPLGSVDAFKDGLVEIQDEGSQLVALAVAPKPGHQVVDFCAGAGGKTLAVA 256

Query: 263 ERTP-ESQVVAIDCDETRLKRVRENLQRLEL---TAQVICGDARYPQQWWQGEQFDRILL 318
                + +VVA D  + RLKR  E  +R  L    A  +  + R P       +FDR+L+
Sbjct: 257 ALMKNKGRVVACDVLDKRLKRAAERFRRAGLHNIEAHPLTSE-RDPWVKRHKRKFDRVLV 315

Query: 319 DAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQE 378
           DAPCS TG  RR+PD +W +    +  L  LQ  ILD+  + +KPGG L+YATCS+   E
Sbjct: 316 DAPCSGTGTWRRNPDARWRQLGPGLEQLLPLQANILDSAARLVKPGGRLIYATCSMLHDE 375

Query: 379 NRLQVKAFLERTPD-----------ARLVGSEPAQPG--RQILPGEEAMDGFYYAVLSKQ 425
           N  QV+AFL+   D              VG+ P   G   ++ P +   DGF+ AVL ++
Sbjct: 376 NEAQVEAFLQTHHDFIVKPVAEVWAEEEVGAPPPVDGPYLRLTPAKHDTDGFFAAVLERR 435