Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., Sun protein from Agrobacterium fabrum C58

 Score =  181 bits (459), Expect = 4e-50
 Identities = 141/447 (31%), Positives = 216/447 (48%), Gaps = 49/447 (10%)

Query: 4   RAAAASALYQVVDLGHSLSNALPAAQ-----QQIRPRDHALLQEICYGVLRQLPRLESIS 58
           R AA   L  V++   S+   L +       + +   D AL++ +    LR LPR+E+  
Sbjct: 39  RIAATRILAAVLEKKTSMDGMLDSENGNPVYRALSLADRALVRAVVNSALRHLPRIETAL 98

Query: 59  QALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGA-QDLKGPRLRGLINAV 117
             L+  PL    R  H +++VG  Q+ ++ +P H+AV   VE A +D +  R   L+NAV
Sbjct: 99  SMLLDGPLPQGARSLHHVLVVGAAQMLYLDVPDHSAVDLAVEQAHRDPRNRRFVKLVNAV 158

Query: 118 LRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQW-QQIVEANNSKAPMWLRVN 176
           LR   R++  ++             P W    L  +Y ++  Q+I +A  + + + L V 
Sbjct: 159 LRRLGREKAEIEKAIADVPV----LPEWFYARLVSAYGDEVAQRISQAQLTPSCIDLTV- 213

Query: 177 HQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLAL 236
                +A+     E+ G    P+         E    +  L GFAEG   VQD AA + +
Sbjct: 214 -----KADPALWAERLGGTLMPNGSVRLG---EFEGQIPSLDGFAEGAWWVQDLAASMPV 265

Query: 237 TYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQV 296
             L   +G+ + D CAAPGGKTA +      ++V A+D    RL+R+RENL RL L A+ 
Sbjct: 266 RLLGDISGKRVADLCAAPGGKTAQLA--LAGARVTALDQSGNRLRRLRENLDRLGLHAET 323

Query: 297 ICGDARYPQQWWQGEQ-FDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILD 355
           +  +       +Q EQ FD +LLDAPCS+TG +R+HPD+ W +  +DIA LA LQ ++L 
Sbjct: 324 VEANMLK----YQPEQLFDAVLLDAPCSSTGTLRKHPDVCWTKDENDIAKLAALQGQMLR 379

Query: 356 AMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQPGRQILPGEEA-- 413
                + PGG +V++ CS+ P E    +   L   PD   V        R+  PG EA  
Sbjct: 380 HALTLVGPGGLVVFSNCSLDPSEGEEMIAEVLAENPDVERVAVH-----REDWPGMEAAI 434

Query: 414 ---------------MDGFYYAVLSKQ 425
                          +DGF+ +VL K+
Sbjct: 435 SAAGDLRTTPDMFGGVDGFFSSVLRKK 461