Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., Ribosomal RNA small subunit methyltransferase B from Acinetobacter radioresistens SK82

 Score =  281 bits (720), Expect = 2e-80
 Identities = 180/433 (41%), Positives = 240/433 (55%), Gaps = 20/433 (4%)

Query: 1   MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQA 60
           +N+RA    +L   V  G SLS  L     Q+  RD AL  E+  G LRQ   L+S++  
Sbjct: 11  LNLRAQVVHSLL-AVQQGQSLSLILNQQLNQVADRDRALFHELLLGTLRQWFALKSLALP 69

Query: 61  LMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRN 120
           L+ KPL     V    + +GLYQ+   RI  HAA+ ETV   + L    L G++NA+LR 
Sbjct: 70  LLTKPLNNP--VVETCLYLGLYQVLCTRIAPHAAISETVTATKQLGFHPLSGVVNAILRR 127

Query: 121 YQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHH 180
             R+ E    Q T + A  +G P WL K L + +PEQ Q + +     AP+ LRVN +  
Sbjct: 128 ATRETEQF--QHTLNQA--HGLPSWLFKRLNKDWPEQIQSLSQNLKQSAPLTLRVNQRKI 183

Query: 181 TRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLA 240
           +R  Y   L    I       +E  + L+    + +LPG+ EGW SVQD  AQL+ + L 
Sbjct: 184 SREAYLEQLHNIQIQAHACVVSEVGIVLDQSMPIRELPGYDEGWFSVQDEHAQLSTSLLP 243

Query: 241 PQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA---QVI 297
               + ++D CAAPGGKTAH+LE+   + +VA+D D  RLKR+ ENLQRL+L A   Q+ 
Sbjct: 244 NLNTKTVIDACAAPGGKTAHLLEKYQPALLVALDQDPQRLKRITENLQRLDLEAGHVQIE 303

Query: 298 CGDARYPQQWWQGEQ-FDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDA 356
            GDA      WQ EQ  D I+LDAPCSA GV+RRHPDI+ LR+  DIA   +LQ+ IL  
Sbjct: 304 AGDATR----WQPEQPVDCIILDAPCSAIGVLRRHPDIRLLRQPSDIAQTVDLQKRILHH 359

Query: 357 MWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA---RLVGSEPAQP--GRQILPGE 411
           MWQQL  GG+L+Y TCSI   EN  Q+  F     DA   ++      +   GRQ+LP  
Sbjct: 360 MWQQLNVGGTLLYITCSILKVENEQQMTQFFIEHKDAVEDKIQADWGIEQLYGRQLLPEP 419

Query: 412 EAMDGFYYAVLSK 424
              DGFYY  + K
Sbjct: 420 GHGDGFYYCRIKK 432