Pairwise Alignments

Query, 507 a.a., ATP-dependent protease from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination from Variovorax sp. SCN45

 Score =  387 bits (993), Expect = e-112
 Identities = 231/462 (50%), Positives = 295/462 (63%), Gaps = 19/462 (4%)

Query: 49  VRSAIINSRFEFPA-KRITVNLAPADLPKEGGRFDLPIALGILAASDQIARNKLESYEFI 107
           VRSAI N+  E+P  K+I VNLAPADLPK+ GRFDLPIALGILAAS QI   +L  +EF 
Sbjct: 1   VRSAIQNAGLEYPNNKKIVVNLAPADLPKDSGRFDLPIALGILAASGQIDNARLAGHEFA 60

Query: 108 GELALSGEIRGVKGVLPAALAANQ--VERCLVVPHSNGDQAALVGVERHKSAQSLLEVCA 165
           GEL+LSGE+R V+G L  ALA +   V   LV+P  +  +AALV       A+ LL+V  
Sbjct: 61  GELSLSGELRPVRGALAMALALHTRGVATRLVLPLDSAHEAALVPGSEVYGARHLLDVVR 120

Query: 166 D-LCGQQTLSLFQSSP--------SVQQVSQTR--DLQDIIGQQQGKRALEIAAAGNHNL 214
             +   +  S +   P        +    S  R  DL D+ G    KRALEIAAAG H+L
Sbjct: 121 QFVVDTEAASQWPDPPPDGWARVHAAPGASAPRYADLADVKGHAGAKRALEIAAAGGHSL 180

Query: 215 LFLGPPGTGKTMLASRLCDLLPEMSDEEAMETASIASLTQQEINQHNWKLRPFRAPHHSS 274
           L +G PG+GK+MLA R   LLP MS +EA+E+A++ASL  +   +  W LRP  APHH+S
Sbjct: 181 LMMGEPGSGKSMLAQRFAGLLPAMSIDEALESAAVASLGGRFATER-WMLRPTSAPHHTS 239

Query: 275 SMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLESGEIVISRAQGKTR 334
           S  ALVGGG+ PRPGEIS AH+G+LFLDE PEF R  L++LREPLE+G I I+RA     
Sbjct: 240 SAVALVGGGSPPRPGEISRAHHGVLFLDEFPEFARSALEALREPLETGTITIARAARSAE 299

Query: 335 FPARFQLVGALNPSPTGYYEGSQARA---NPQSILRYLSRLSGPLLDRFDMSIEIPALPK 391
           FPARFQL+ A+NP P GY   ++++A    P  I RY  +LSGPLLDR D+ IE+PA+  
Sbjct: 300 FPARFQLIAAMNPCPCGYLGSTKSKACRCTPDQISRYQGKLSGPLLDRIDLHIEVPAVSA 359

Query: 392 GTLANGGDRGESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESA 451
             L +    GEST ++R RV VARER + R G  N  LQ   I+++  L  A  +F+ +A
Sbjct: 360 QQLLD-APPGESTESIRSRVIVARERAMQRQGYANQSLQGSAIDKHAGLDDAARKFMFNA 418

Query: 452 LHRLGLSIRAYHRIIKVARTIADLQGEAQIARPHLAEALGYR 493
             +LG S R+ HR +KVARTIADL     +   HLAEA+ YR
Sbjct: 419 AAKLGWSARSTHRALKVARTIADLGSAEAVQVEHLAEAVQYR 460