Pairwise Alignments

Query, 184 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., Putative transmembrane protein from Sphingobium sp. HT1-2

 Score =  166 bits (421), Expect = 2e-46
 Identities = 91/182 (50%), Positives = 124/182 (68%), Gaps = 4/182 (2%)

Query: 1   MSVLAISITTVALAEIGDKTQLLSLLLASRYRKPIPIIAAIFLATLANHALAAWLGVVVA 60
           M     S   VALAE+GDKTQLL++LLA+R+RKP+PII  IF+AT+ANH LAA +G  +A
Sbjct: 1   MEAFLTSTALVALAEMGDKTQLLAMLLATRFRKPVPIILGIFVATIANHFLAALVGHSIA 60

Query: 61  DYLSPDILKWVLVVSFLAMAGWILIPDKLDGEESI---STRGPFVASFIAFFMAEIGDKT 117
             L+    ++ +  SF+AMA W L+PDK+D +  +   S  G FV + +AFF+ E+GDKT
Sbjct: 61  GVLTQPWFRYAVAGSFIAMALWTLVPDKIDEDAPLKAPSKAGVFVTTLVAFFLVEMGDKT 120

Query: 118 QIATSILGAQYADALSWVIVGTTLGMLLANVPVVLIGKLSADKMPLGLIRKVTAGLFLLM 177
           Q+AT  LGAQ+ D L  V  GTT GM+LANVP VL G+  A ++P+  ++   A LFLL+
Sbjct: 121 QVATVALGAQF-DNLLAVTAGTTCGMMLANVPAVLFGEALAKRVPMRALQIGAALLFLLL 179

Query: 178 AL 179
            L
Sbjct: 180 GL 181



 Score = 36.2 bits (82), Expect = 4e-07
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 101 FVASFIAFFMAEIGDKTQIATSILGAQYADALSWVIVGTTLGMLLANVPVVLIGKLSADK 160
           F+ S     +AE+GDKTQ+   +L  ++   +  +I+G  +  +  +    L+G   A  
Sbjct: 4   FLTSTALVALAEMGDKTQLLAMLLATRFRKPVP-IILGIFVATIANHFLAALVGHSIAGV 62

Query: 161 MPLGLIRKVTAGLFLLMALAT 181
           +     R   AG F+ MAL T
Sbjct: 63  LTQPWFRYAVAGSFIAMALWT 83



 Score = 29.6 bits (65), Expect = 3e-05
 Identities = 17/82 (20%), Positives = 37/82 (45%)

Query: 3   VLAISITTVALAEIGDKTQLLSLLLASRYRKPIPIIAAIFLATLANHALAAWLGVVVADY 62
           V   ++    L E+GDKTQ+ ++ L +++   + + A      +  +  A   G  +A  
Sbjct: 103 VFVTTLVAFFLVEMGDKTQVATVALGAQFDNLLAVTAGTTCGMMLANVPAVLFGEALAKR 162

Query: 63  LSPDILKWVLVVSFLAMAGWIL 84
           +    L+    + FL +  W++
Sbjct: 163 VPMRALQIGAALLFLLLGLWMI 184