Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 808 a.a., DNA gyrase subunit B from Xanthobacter sp. DMC5

 Score =  851 bits (2198), Expect = 0.0
 Identities = 456/808 (56%), Positives = 568/808 (70%), Gaps = 15/808 (1%)

Query: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
           ++Y + SI+VLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDN+IDEALAG+ K++ VT
Sbjct: 11  DDYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGWAKEVTVT 70

Query: 63  IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           +  + SV+V+DDGRGIPT++HPEE VSAAEVIMT LHAGGKF+ NSYKVSGGLHGVGVSV
Sbjct: 71  LEANGSVTVTDDGRGIPTDLHPEEGVSAAEVIMTQLHAGGKFNQNSYKVSGGLHGVGVSV 130

Query: 123 VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE--RTGTTVRFWPSAQTFTNIE 180
           VNALS  + LTI+R GK H   + HG  +APL VVG     + GT V F PS +TFT IE
Sbjct: 131 VNALSTTLDLTIWRDGKEHYMRFRHGDAEAPLKVVGTAPAGKRGTKVTFLPSPETFTRIE 190

Query: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239
           F Y  L  RLREL+FLNSGV I LTD R  E K++   YEGG++AFV +L+RNKT +  K
Sbjct: 191 FDYATLEHRLRELAFLNSGVLIVLTDARGPEPKREELHYEGGVEAFVKYLDRNKTALIAK 250

Query: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299
                 E+ DGI+VE A+ WNDG+ EN+ CFTNNIPQRD GTH  GF  ALTR +  Y +
Sbjct: 251 PVVIRAEK-DGITVEAALSWNDGYHENVLCFTNNIPQRDRGTHFTGFAAALTRQVLGYAN 309

Query: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359
             G SKK +   +G+D REGLTAV+SVKVPDPKFSSQTKDKLVSSEV+  VE+ + E LA
Sbjct: 310 TSGISKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENLVGEALA 369

Query: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419
           ++  ENP EAKNV  K+++AA AREAARKAR++TRRK  LD+A LPGKLADCQEKDPA S
Sbjct: 370 NWFEENPVEAKNVIGKVVEAAAAREAARKARDLTRRKSPLDVASLPGKLADCQEKDPAKS 429

Query: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479
           E++IVEGDSAGGSAKQGR+R  QA+LPL+GKILNVE+ARFDKMLSS+++ TLITALG GI
Sbjct: 430 EIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGTGI 489

Query: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539
           GRD+++  KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMPE+++ G+++IAQPPLYKV 
Sbjct: 490 GRDDFDIAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEIVDAGHLFIAQPPLYKVA 549

Query: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599
           +GK E Y+KDE+A+  Y +   ++ A LH+ A      G  L  +V         +  + 
Sbjct: 550 RGKSETYLKDEKALEDYLITTGLEEASLHL-ATGEVRTGADLAHVVDVSRQLRSALSALH 608

Query: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLN--AKEVGASQYSVLVEHNAE 657
            RY  A+  +             D A   A    +  +L+  A E       +  E    
Sbjct: 609 PRYNRAVAEQAALAGAFAPAALEDAATGSAAAAEVARRLDALADETERGWTGICDETG-- 666

Query: 658 LNVYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPI 717
              Y+    VR  GV     L    I S E  +L  L+  LDG+  A A +KR    Q +
Sbjct: 667 ---YVFSRTVR--GVAEVARLDHAFIASPEARRLDTLARDLDGVFAAAATLKRRSDEQVL 721

Query: 718 SSFAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADEL 777
                  D +    R+GLS+QRYKGLGEMNP+QLWETT+D   R ++QV +++   AD+L
Sbjct: 722 FGAVDLFDAVTDSGRKGLSLQRYKGLGEMNPEQLWETTLDINARSLLQVRVKEVDAADDL 781

Query: 778 FTTLMGDQVEPRRAFIETNALKVANLDV 805
           F+ LMGD VEPRR FI+ NAL+ A++DV
Sbjct: 782 FSRLMGDTVEPRREFIQENALR-ASVDV 808