Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 694 a.a., DNA gyrase subunit B from Xanthobacter sp. DMC5

 Score =  439 bits (1130), Expect = e-127
 Identities = 250/561 (44%), Positives = 350/561 (62%), Gaps = 15/561 (2%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           M+ +Y ++ I+VL+GL+ VR+RPGMYIG TD    LHH+  EVVDNS+DEA+AG+   I 
Sbjct: 47  MAGDYTAAHIEVLEGLEPVRRRPGMYIGGTDS-KALHHLFAEVVDNSMDEAVAGHATFIE 105

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119
           V +  D  ++VSD+GRGIP E HP+    SA EVIMT LHAGGKFD   Y+ SGGLHGVG
Sbjct: 106 VQLGADGYLTVSDNGRGIPVEEHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVG 165

Query: 120 VSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGE-TERTGTTVRFWPSAQTF-T 177
           VSVVNALS+ + + + R   ++ Q++  GVPQ PL  VG  T R GT VRF P  + F  
Sbjct: 166 VSVVNALSDDLEVEVARNQTLYRQSFSKGVPQGPLKEVGRITNRRGTRVRFHPDPEIFGE 225

Query: 178 NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDK-------KDHFMYEGGIQAFVTHLN 230
              F    + +  R  ++L  GV I+ + + E  K       K  F + GG++ ++    
Sbjct: 226 GAHFEPARVFRMARSKAYLFGGVEIRWSCDPELLKAGENIPEKTVFRFPGGLKDYLAADL 285

Query: 231 RNKTPIHEKVFHFNQEREDGI-SVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGA 289
              T +H  +F    ++  G  SVE A+ W      +I  + N IP  DGGTH  G R  
Sbjct: 286 EGNTLVHPDIFAGRIQKTGGHGSVEWAVAWVADADGSISSYCNTIPTPDGGTHENGLRTV 345

Query: 290 LTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 349
           L + L ++ ++ G  K+  A  +GDD   G  A++SV V +P+F  QTKD+L ++E    
Sbjct: 346 LLKGLKDHAERSGQGKRG-AIITGDDVITGCAAMLSVFVREPEFQGQTKDRLATAEAARI 404

Query: 350 VESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 409
           VE A+ +    +LA NP +A  +   +ID A  R   ++ +E++R+     L  LPGKLA
Sbjct: 405 VEQALRDPFDHWLAANPVQASRLLDHVIDRAEERLRRKQEKEVSRKTAVRKLR-LPGKLA 463

Query: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469
           DC   + A SE++IVEGDSAGGSAKQ R+RK QA+LPL+GKILNV  A  DK+ ++Q++A
Sbjct: 464 DCSNTEAAGSEIFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVANATRDKLAANQQLA 523

Query: 470 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 529
            L  ALGCG     Y    LRY  +IIMTDADVDG+HI +LL+T+F+RQMP+LIE G+++
Sbjct: 524 DLGQALGCGT-LAHYREADLRYEKVIIMTDADVDGAHIASLLVTYFFRQMPKLIEEGHLF 582

Query: 530 IAQPPLYKVKKGKQEQYIKDE 550
           +A PPLY++ +G +  Y +D+
Sbjct: 583 LAVPPLYRITQGAKTLYARDD 603



 Score = 60.5 bits (145), Expect = 3e-13
 Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 735 LSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGAD--ELFTTLMGDQVEPRRAF 792
           + + R+KGLGEM P QL ETTMDP+TR + +V++EDA  A   +L   LMG++ E R AF
Sbjct: 620 VDVGRFKGLGEMMPAQLKETTMDPKTRTLQRVSVEDAERAATVDLVERLMGNKPEARFAF 679

Query: 793 IETNA 797
           I   A
Sbjct: 680 ISERA 684