Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., DNA topoisomerase IV subunit B from Pseudomonas simiae WCS417

 Score =  359 bits (922), Expect = e-103
 Identities = 214/555 (38%), Positives = 320/555 (57%), Gaps = 21/555 (3%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           +++Y++ +I+VL GLD VRKRPGMY     D +  +H+  EV+DNS+DEALAG+ K + V
Sbjct: 6   ASSYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHAKSVHV 61

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121
            +H D+S+ VSDDGRG+P ++HPEE V   E+I+T LHAGGKF + +Y+ SGGLHGVG+S
Sbjct: 62  ILHADHSLEVSDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 121

Query: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET--ERTGTTVRFWPSAQTFTNI 179
           VVNALS  V + + R G  +  T+  G     L V+G      TGT+V F P  + F + 
Sbjct: 122 VVNALSTLVRVKVKRDGNEYQMTFADGYKATDLEVIGTVGKRNTGTSVYFAPDPKYFDSP 181

Query: 180 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239
           +F    L   L+  + L  G+ +   D+   +K + + YE G+++++     +   +  +
Sbjct: 182 KFSISRLKHVLKAKAVLCPGLVVTFEDKGTGEKVE-WHYEDGLRSYLEDSVSDFERLPNE 240

Query: 240 VFHFNQEREDGISVEVAMQW----NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLN 295
            F       +  +V+ A+ W     D  QE+   + N IP   GGTH+ G R  L   + 
Sbjct: 241 PF-CGSLAGNKEAVDWALLWLPEGGDSVQES---YVNLIPTAQGGTHVNGLRQGLLDAMR 296

Query: 296 NYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMN 355
            + +      +     + +D  E +  V+S+K+ +P+FS QTK++L S E  + V   + 
Sbjct: 297 EFCEYRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVK 355

Query: 356 EKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 415
           +  + +L E+P     +    I+ A  R    KA +   RK       LPGKLADC  +D
Sbjct: 356 DAFSLWLNEHPELGLALAELAINNAGRR---LKASKKVERKRITQGPALPGKLADCAGQD 412

Query: 416 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 475
           P  SEL++VEGDSAGGSAKQ R+++ QAILPL+GKILN  +    ++L+SQEV  +  A+
Sbjct: 413 PMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAVAI 472

Query: 476 GCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPL 535
           G   G  + +  +LRY  I I+ DAD DG HI TLL   F +    L+E G++Y+A PPL
Sbjct: 473 GVDPGAADMS--QLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPPL 530

Query: 536 YKVKKGKQEQYIKDE 550
           Y++  GK+  Y  DE
Sbjct: 531 YRIDLGKEIYYALDE 545



 Score = 63.5 bits (153), Expect = 3e-14
 Identities = 34/75 (45%), Positives = 51/75 (68%), Gaps = 3/75 (4%)

Query: 724 LDWLIKESRRGL-SIQRYKGLGEMNPDQLWETTMDPETRRMMQVTI-EDAVGADELFTTL 781
           LD L+ E +RG   + R+KGLGEMNP QL ETTMDP TRR++Q+T+ +D     E+   L
Sbjct: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLGDDFAATSEMMDML 611

Query: 782 MGDQVEP-RRAFIET 795
           +  +  P R++++E+
Sbjct: 612 LAKKRAPDRKSWLES 626