Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 869 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  880 bits (2273), Expect = 0.0
 Identities = 466/845 (55%), Positives = 592/845 (70%), Gaps = 46/845 (5%)

Query: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
           N+Y   SI +L+GL+AVRKRPGMYIGDT DGTGLHH+VFEVVDNSIDEALAG+C DIVVT
Sbjct: 29  NSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVT 88

Query: 63  IHEDNSVSVSDDGRGIPTEMHPEEKV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118
           IH DNS+SV+D+GRGIPT +  ++K     SAAE+ +T LHAGGKF+ NSYKVSGGLHGV
Sbjct: 89  IHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGV 148

Query: 119 GVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQ------------APLAVVGETERTGTT 166
           GVS VNALS  + L + R GKIH   +  G  Q            +P+ ++G+T++ GT 
Sbjct: 149 GVSCVNALSVMLRLVVRREGKIHELEFSRGFVQNRLLETVSGVEVSPMKIIGDTDKRGTE 208

Query: 167 VRFWPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAF 225
           V F P  Q F  N +FHY+IL+KRLRELSFLN+GV I+L DER   K+D F   GG++ F
Sbjct: 209 VHFLPDTQIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERT-GKEDDFSGAGGVRGF 267

Query: 226 VTHLNRNKTPIHEKVFHFNQEREDG---------ISVEVAMQWNDGFQENIYCFTNNIPQ 276
           V  +N+ KT +H   F+   ER            I VEVAMQWN G+ E + CFTNNIPQ
Sbjct: 268 VEFINKGKTVLHPNSFYAEGERPADTYGGIPGTHIGVEVAMQWNSGYNEQVLCFTNNIPQ 327

Query: 277 RDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQ 336
           RDGGTHL G R A+TR +N Y+++  F+KKA+   +GDD REGL  V+SVKVP+PKFSSQ
Sbjct: 328 RDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQ 387

Query: 337 TKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRK 396
           TKDKLVSSEV++ VE  + + L D+L E P++AK +C KI++AARAREAARKAREMTRRK
Sbjct: 388 TKDKLVSSEVRAPVEDIVGKLLTDYLQERPNDAKIICGKIVEAARAREAARKAREMTRRK 447

Query: 397 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 456
           G LD  GLPGKLADCQEKDPAL E+Y+VEGDSAGGSAKQGR+RK QAILPL+GKILNVEK
Sbjct: 448 GVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEK 507

Query: 457 ARFDKMLSSQEVATLITALGCGIGR----------DEYNPDKLRYHNIIIMTDADVDGSH 506
           AR++K+L+S E+ T+ITALG GIGR          D++N  KLRYH IIIMTDADVDG+H
Sbjct: 508 ARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLRYHRIIIMTDADVDGAH 567

Query: 507 IRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAE 566
           IRTLLLTFFYRQMPEL+ERG+IYIAQPPLYKVK GK+EQY+KD  A++ + + +A+  A 
Sbjct: 568 IRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLKVALKDAR 627

Query: 567 LHV-NADAPALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIYVPRINAELCADKA 625
           +    A +  L+G+ L +L +++  A  ++ R+        L  +     ++ +      
Sbjct: 628 IETGGASSTTLSGDTLAELARKHQVAEAVIARLRNFMDAEALRAIADGVALDLDTTPAAE 687

Query: 626 AVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYLPKIQVRTHGVTHEYLLSADLINS 685
           A     Q  + +LN   V A    V  E +A  +  L +I  R HG     +L+ D ++ 
Sbjct: 688 ASAVALQAKLRELNTTGVPA---EVSSEFDARTDKPLLRISRRHHGNIKSSVLTQDFVHG 744

Query: 686 KEYAKLADLSEALDGLIE-AGAFIKRGE----RVQPISSFAAALDWLIKESRRGLSIQRY 740
            +YA LA+ +    GL+   GA +KRGE    + + +  F  A+ WLI E+ R  S QRY
Sbjct: 745 ADYAALAEAANTFRGLLSPEGALVKRGEGERAKEEKVDDFRQAMKWLISEAERATSRQRY 804

Query: 741 KGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNALKV 800
           KGLGEMNP+QLWETTMDP  RR+++V I+DA+ AD +FT LMGD+VEPRR FIE NAL+ 
Sbjct: 805 KGLGEMNPEQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRREFIEQNALRA 864

Query: 801 ANLDV 805
           AN+DV
Sbjct: 865 ANIDV 869