Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., DNA topoisomerase IV subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  365 bits (936), Expect = e-105
 Identities = 227/582 (39%), Positives = 336/582 (57%), Gaps = 28/582 (4%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           S+ Y   SI+VLKGL+ V++RPGMY   TD+     H++ EV+DN+ DEALAG+ K I V
Sbjct: 15  SSGYSEGSIRVLKGLEPVKQRPGMYTR-TDNPL---HIIQEVIDNAADEALAGHGKKIKV 70

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNS---YKVSGGLHGV 118
           T+H D SVS+ DDGRGIP  +HPEEK    E++ T LHAGGKFD  S   Y  SGGLHGV
Sbjct: 71  TLHADGSVSIEDDGRGIPFGLHPEEKAPVVELVYTRLHAGGKFDKGSGGAYSFSGGLHGV 130

Query: 119 GVSVVNALSEKVLLTIYRGGKIHSQTYHHG--VPQAPLAVVGETER-TGTTVRFWPSAQT 175
           GVSV NALS+++ ++ +R G I    +  G  + Q  +  +   ER  GTTVR WP A+ 
Sbjct: 131 GVSVTNALSKRLEVSTHREGSIAKLAFSGGDVIEQLEVRKLEAGERKQGTTVRAWPDAKY 190

Query: 176 FTNIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTH-LNRNKT 234
           F         L   LR  + L  GVS+ LT+E+ ++ +  ++Y+GG+  ++   LN +  
Sbjct: 191 FETAALPMGELTHLLRSKAVLMPGVSVTLTNEKTKESQ-QWLYKGGLSDYLMQTLNGDPV 249

Query: 235 -PIHEKVFHFNQERE---DGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290
            P+ E   H ++  +   +G   +  + + +  Q     + N IP   GGTH +G R  L
Sbjct: 250 IPLFEGGGHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNLIPTSAGGTHESGLRDGL 309

Query: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350
              +  +++      K       +D     + V+S KV DP+F  Q K++L S +    V
Sbjct: 310 FTAVKGFIELHSLLPKG-VKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAVRLV 368

Query: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410
            S +   L  +L ++    K +    I AA+ R+  R  +++ +RKG+  +A LPGKL D
Sbjct: 369 SSFVRPALELWLNQHVDYGKKLAELAIKAAQTRQ--RAGQKVEKRKGS-GVAVLPGKLTD 425

Query: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470
           C+ KD + +E+++VEGDSAGGSAK GR++++QAILPL+GK+LN  +   D++ ++ E+  
Sbjct: 426 CESKDISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFANTEIHD 485

Query: 471 LITALGCGIGRDEYNPDK--LRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYI 528
           +  A+G         PD   LRY  I I++DADVDGSHI+ LLLT F+R  P+LIE G++
Sbjct: 486 ISVAVGVDPHGPNDTPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHV 545

Query: 529 YIAQPPLYKV------KKGKQEQYIKDEEAMNQYQVALAMDG 564
           Y+A+PPL++V      KK   + Y  DE  +      L  DG
Sbjct: 546 YVAKPPLFRVDAPARGKKPASKVYALDEGELTATLDKLRKDG 587



 Score = 59.3 bits (142), Expect = 7e-13
 Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 722 AALDWLIKESRR--GLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIE--DAVGADEL 777
           A LD L K+  R    SI R+KGLGEM+ +QLWETT++P+TRR+MQV +   D       
Sbjct: 578 ATLDKLRKDGVREGAWSISRFKGLGEMSAEQLWETTLNPDTRRLMQVQLGRFDFTSTQGE 637

Query: 778 FTTLMG-DQVEPRRAFIETNA 797
            T LMG  +   RR  +E  A
Sbjct: 638 ITKLMGKGEAAARRELMELRA 658