Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 838 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  841 bits (2172), Expect = 0.0
 Identities = 468/843 (55%), Positives = 583/843 (69%), Gaps = 57/843 (6%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           SN Y + SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMVFEV DN+IDEALAG+C  IV+
Sbjct: 14  SNEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDRIVI 73

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKF----DDNSYKVSGGLHG 117
           T++ DNSVSV D+GRGIPT +H EE VSAAEVIMT LHAGGKF    DDN+YKVSGGLHG
Sbjct: 74  TLNPDNSVSVEDNGRGIPTGIHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHG 133

Query: 118 VGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE--RTGTTVRFWPSAQ- 174
           VGVSVVNALSE + L I+R GK H   + +G   APL V+G+    + GT V F  S + 
Sbjct: 134 VGVSVVNALSEWLDLNIWRDGKEHWMRFAYGDATAPLKVIGDAPEGKKGTRVTFLASTEK 193

Query: 175 ------TFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKD-HFMYEGGIQAFV 226
                 TF N  E+ +D L  R REL+FLNSGV + L D R E+KK+    YEGGI AFV
Sbjct: 194 VPGDGGTFKNQTEYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVELYYEGGIAAFV 253

Query: 227 THLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGF 286
            +L+RNK  +          R+D ++++VA++WND + EN+ CFTNNIPQRDGGTHLA F
Sbjct: 254 KYLDRNKNALMPDPIAIAGTRDD-VTIDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAF 312

Query: 287 RGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 346
           R ALTRTLN+Y +K G  KK + + +G+D REGLTA+VSVK+PDPKFSSQTKDKLVSSEV
Sbjct: 313 RAALTRTLNSYAEKTGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEV 372

Query: 347 KSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG 406
           +  +ES M +K+A++L ENP   K +  K+IDAA AREAA++ARE+TRRKGA+D+A LPG
Sbjct: 373 RQPLESLMADKMAEWLEENPGHGKMIVQKVIDAAAAREAAKRARELTRRKGAMDIASLPG 432

Query: 407 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 466
           KLADCQE+DPA SEL++VEGDSAGGSAKQGRNR NQAILPLKGKILNVE+ARFDKMLSS+
Sbjct: 433 KLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERARFDKMLSSK 492

Query: 467 EVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 526
           EV TLI A+G GI RD++N DKLRYH I+IMTDADVDG+HIRTLLLTFFYRQMP++IE G
Sbjct: 493 EVGTLIQAMGTGI-RDDFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQIIEAG 551

Query: 527 YIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQ 586
           +++IAQPPLYK  +G+ E Y+KDE A+ QY V   +D   L       A  G+ L  L+ 
Sbjct: 552 HLFIAQPPLYKASRGRSEVYLKDEAALEQYLVDNGVDTMALETTGG--ARTGDDLRSLID 609

Query: 587 QYNAAIKLVERMSRRYPYAMLHELIYVPRINAEL----CADKAAVEA-----------WT 631
                  ++  + RRY  A++  L     ++ EL     A++ A+             WT
Sbjct: 610 HARRMRAVMRYVPRRYDPAIIEALGLTGALDPELSEAQLAERLAMAVAWIASHDPEGKWT 669

Query: 632 QRLVEQLNAKEVGASQYSVL----VEHNAELNVYLPKIQVR-THGVTHE----YLLSADL 682
            R+ E       G   +  L     +H+   + +L   + R  HG   E    Y   + L
Sbjct: 670 GRIAEG------GGFHFERLWRGVTDHHVIEHGFLGSAEARKLHGTASEEAESYAKGSRL 723

Query: 683 INSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAAALDWLIKESRRGLSIQRYKG 742
           +++K  A   +L E      E  A   +G     IS  +  L+ ++   R+GLSIQRYKG
Sbjct: 724 VSAKAVAAQDELGED-----ELPAVSAKGVN---ISRPSELLEAILSAGRKGLSIQRYKG 775

Query: 743 LGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNALKVAN 802
           LGEMN +QLWETT+DP+ R M++V +E A  ADE+FT LMGD VEPRR FI+ NAL VAN
Sbjct: 776 LGEMNAEQLWETTLDPDNRSMLRVEVEQADVADEIFTKLMGDVVEPRREFIQDNALNVAN 835

Query: 803 LDV 805
           LDV
Sbjct: 836 LDV 838