Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., DNA topoisomerase IV subunit B (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  414 bits (1064), Expect = e-120
 Identities = 238/578 (41%), Positives = 351/578 (60%), Gaps = 14/578 (2%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           S  YD+S+I+VL+GL+ VR+RPGMYIG  D+    HH+  EV+DNS+DEA+AG+   I +
Sbjct: 14  SPGYDASTIEVLEGLEPVRRRPGMYIGGIDE-RAFHHLASEVLDNSMDEAVAGHATRIEI 72

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           ++   N ++++D+GRGIP + HP+    SA EVI+T LH+GGKF+  +Y  SGGLHGVG+
Sbjct: 73  SLEPGNKLTITDNGRGIPVDDHPKFPGKSALEVILTTLHSGGKFEGKAYATSGGLHGVGI 132

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTFTNI 179
           SVVNALS K ++ + R  ++  Q++  G+P + L  VG    R GT V F P ++ F   
Sbjct: 133 SVVNALSIKTVIEVARNKELFRQSFSQGLPTSGLEKVGAAPNRRGTAVSFIPDSEIFGEQ 192

Query: 180 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDH-----FMYEGGIQAFVTHLNRNKT 234
           +F    L +  R  ++L +GV I+     E    D      F + GG+   +     ++ 
Sbjct: 193 KFKPAKLYRLARSKAYLFAGVEIRWKCAPELIGDDTPPEAVFQFPGGLADHLKEQLGDRE 252

Query: 235 PIHEKVFHFNQERE-DGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRT 293
               + F  NQ+   +   VE A+ W      +   + N IP  DGGTH  G R AL + 
Sbjct: 253 CATTQFFSGNQDFPGEAGRVEWAVAWPLWSDGSYSWYCNTIPTPDGGTHENGLRAALVKG 312

Query: 294 LNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353
           +  + +  G  KKA+  T+ DD       ++SV + DP+F SQTKD+L S +    VE+A
Sbjct: 313 IRAFGELVG-QKKAKDITA-DDIMTSSEIMLSVFIRDPQFQSQTKDRLTSPDAARLVENA 370

Query: 354 MNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKG-ALDLAGLPGKLADCQ 412
           + +    FL ++    K + + +ID    R   ++ +E+ R+   +     LPGKL DC 
Sbjct: 371 VRDHFDHFLTDHMDRGKALLAYVIDRMDERLKRKQEKEVKRKTATSARKLRLPGKLTDCS 430

Query: 413 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 472
             DP  +E+++VEGDSAGGSAKQ R+RK QAILPL+GKILNV  A   K+L++QE+A +I
Sbjct: 431 NDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTAKILANQEIADMI 490

Query: 473 TALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQ 532
            ALGCG  R + NPD LRY  I+IMTDADVDG+HI TLL+TFF+++MPEL+ RG++Y+AQ
Sbjct: 491 LALGCGT-RKDCNPDNLRYERIVIMTDADVDGAHIATLLMTFFFQEMPELVRRGHLYLAQ 549

Query: 533 PPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAELHVN 570
           PPLY++  G +  Y  D +A  +  +A    G ++ ++
Sbjct: 550 PPLYRLTAGGKSLYAMD-DAQREAMLAKEFKGKKVEIS 586



 Score = 62.0 bits (149), Expect = 1e-13
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 5/79 (6%)

Query: 727 LIKESR-RGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVT----IEDAVGADELFTTL 781
           L KE + + + I R+KGLGEMNP QL ETTMDP+TR ++++T    IED     +L   L
Sbjct: 574 LAKEFKGKKVEISRFKGLGEMNPMQLRETTMDPKTRSLIRITLPDDIEDRQQVRDLVERL 633

Query: 782 MGDQVEPRRAFIETNALKV 800
           MG     R AFI+ NA  +
Sbjct: 634 MGTNPAHRFAFIQENAAAI 652